cbrc
MAFFT version 7

Multiple alignment program for amino acid or nucleotide sequences

This server is in the process of switching from HTTP to HTTPS.  No change is necessary for links, bookmarks, etc. in most cases, as they are redirected to HTTPS. 

However, if you are automatically downloading packages (.zip, .rpm, etc) using cURL or other tools, please change the URL from:
http://mafft.cbrc.jp/...
to:
https://mafft.cbrc.jp/...

See here for detailed information.

Linux version

Several packages are available for linux

Usage

% mafft input > output