Rough clustering of Unaligned Sequences

Paste protein or DNA sequences in fasta format. Example

or upload a plain text file:

Distance measure:
Automatic (depends on data size)
Rough (the number of shared 6mers; for >∼1000 sequences)
Accurate (score of pairwise global alignment; for <∼1000 sequences)
Accurate (score of pairwise local alignment; for <∼1000 sequences)

Clustering method:
Average linkage (UPGMA)
Minimum linkage
Memory-saving tree (for more than 50,000 sequences; works only with the Rough distance)

Multiple alignment program for amino acid or nucleotide sequences

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