cbrc
MAFFT version 7

Multiple alignment program for amino acid or nucleotide sequences

All-in-one package for Windows

Download

Multithreading is experimentally supported (2014/Sep).

Installation

Right-click on the downloaded .zip file and select Extract All

It is better not to use parentheses in the destination folder name, like C:\somewhere\mafft-7-win64(1).

Usage

  1. Copy an input file (fasta format; example) into the mafft-win folder (extracted from the package).
  2. Double-click on mafft.bat.  Windows SmartScreen may warn that this app is not signed.

    To run the signed version, right-click (not double-click) on mafft-signed.ps1 and select Run with PowerShellConfirm that Publisher is "Osaka University".

  3. Follow the prompts.  Filename extension (eg., .txt) must be typed, if any.

    cui

Notes