Multiple alignment program for amino acid or nucleotide sequences

Two versions for Windows.

• Cygwin version

• Command-line (UNIX-like) interface.
• Requires Cygwin installed.
• Supports RNA structural alignment (X-INS-i and Q-INS-i). 

• All-in-one version

• Text-based interactive interface for basic features. 
• Does not require Cygwin. 
• Does not support RNA structural alignment (X-INS-i and Q-INS-i). 
• Can be called by any Windows program.