Rough clustering of Unaligned Sequences

Input:
Paste protein or DNA sequences in fasta format. Example

or upload a file:

Distance measure:
Automatic (depends on data size)
Rough (the number of shared 6mers; for ∼500-∼20,000 sequences)
Accurate (score of pairwise global alignment; for <∼500 sequences)
Accurate (score of pairwise local alignment; for <∼500 sequences)

Clustering method:
Average linkage (UPGMA)
Minimum linkage

Multiple alignment program for amino acid or nucleotide sequences

Rough clustering of unaligned sequences (Help)

Settings