MAFFT version 7
Multiple alignment program for amino acid or nucleotide sequences
Unaligned sequences are roughly clustered.
Paste protein or DNA sequences in fasta format.
or upload a
Automatic (depends on data size)
Rough (the number of shared 6mers; for >∼1000 sequences)
Accurate (score of pairwise global alignment; for <∼1000 sequences)
Accurate (score of pairwise local alignment; for <∼1000 sequences)
Average linkage (UPGMA)
Memory-saving tree (for more than 50,000 sequences; works only with the Rough distance)
Mac OS X
Merits / limitations