Jul.12 – 13: Unstable due to maintenance.
Jul.14: If you notice any troubles after this maintenance, let us know.
Multiple sequence alignment and NJ / UPGMA phylogeny
Scoring matrix for amino acid sequences:
Scoring matrix for nucleotide sequences:
↑ Switch it to '1PAM / κ=2' when aligning closely related DNA sequences.
Gap opening penalty:
(1.0 - 5.0)
(0.0 - 1.0)