to GCG, PHYLIP, MSF, NEXUS, uppercase/lowercase, etc. with Readseq
computes the residue-wise confidence scores and extracts well-aligned residues. Beta
CLUSTAL format alignment by MAFFT (v7.023b)
gi|195338887|re ------------------------------------------------------------
gi|21711721|gb| ------------------------------------------------------------
gi|194762235|re ------------------------------------------------------------
gi|195147122|re ------------------------------------------------------------
gi|195117368|re ------------------------------------------------------------
gi|195387788|re ------------------------------------------------------------
gi|195052361|re ------------------------------------------------------------
gi|60393086|gb| ------------------------------------------------------------
gi|74054133|gb| ------------------------------------------------------------
gi|253735641|db ------------------------------------------------------------
gi|170040118|re ------------------------------------------------------------
gi|157127174|re ------------------------------------------------------------
gi|157013971|gb ------------------------------------------------------------
ATTCE|ACEP_0000 ------------------------------------------------------------
gi|21103973|gb| ------------------------------------------------------------
gi|21103975|gb| ------------------------------------------------------------
gi|21103979|gb| ------------------------------------------------------------
gi|340709126|re ------------------------------------------------------------
gi|383864839|re ------------------------------------------------------------
gi|380014047|re ------------------------------------------------------------
gi|328792342|re ------------------------------------------------------------
gi|350419248|re ------------------------------------------------------------
gi|345486197|re ------------------------------------------------------------
gi|21103977|gb| ------------------------------------------------------------
gi|307188089|gb ------------------------------------------------------------
gi|242007977|re ------------------------------------------------------------
gi|357615448|gb ------------------------------------------------------------
gi|389614525|db ------------------------------------------------------------
gi|500860|dbj|B ------------------------------------------------------------
BOMMO|BGIBMGA00 ------------------------------------------------------------
gi|11907531|dbj ------------------------------------------------------------
gi|270008212|gb MAGTASERFVLRRVLALLLASEAELGGVHFHVSRT-----------------TRAPQCKA
gi|294610352|db ------------------------------------------------------------
gi|241620045|re ------------------------------------------------------------
gi|19171515|emb ------------------------------------------------------------
gi|45544551|dbj ------------------------------------------------------------
gi|193712553|re ------------------------------------------------------------
gi|290753130|db ------------------------------------------------------------
gi|164521693|gb ITTRIDLSLDVFMYYHLCYTLNVSCARSYHEGAKEGADIFTKQLKLSNERFGEYSSHNRS
LATCH|ENSLACP00 ------------------------------------------------------------
DANRE|ENSDARP00 ------------------------------------------------------------
HOMSA|gi|488565 ------------------------------------------------------------
XENTR|ENSXETP00 ------------------------------------------------------------
gi|197320531|gb ------------------------------------------------------------
gi|184186101|re ------------------------------------------------------------
gi|87042260|gb| ------------------------------------------------------------
gi|312376154|gb ------------------------------------------------------------
gi|3930521|gb|A ------------------------------------------------------------
gi|17226368|gb| ------------------------------------------------------------
gi|195338887|re -------------------------------------MDISYI----FVICL-MALCSGG
gi|21711721|gb| -------------------------------------MDISYI----FVICL-MALCSGG
gi|194762235|re -------------------------------------MDISYI----FVICL-MALFSSD
gi|195147122|re -------------------------------------MDISYI----FVISLMLALCS--
gi|195117368|re -------------------------------------MDLSYI----FIVCL-LALYS--
gi|195387788|re -------------------------------------MDLSYI----FIVCL-LALCS--
gi|195052361|re -------------------------------------MDLSYM----FIVCL-LALCS--
gi|60393086|gb| -------------------------------------MDLFTI----LRLLTVLLASL--
gi|74054133|gb| ------------------------------------------------------------
gi|253735641|db -------------------------------------MDLLRI----LRLLTILMISL--
gi|170040118|re -------------------------------------MELVTL----FLVCL-MAVSS--
gi|157127174|re ------------------------------------------------MIFLPLLFHR--
gi|157013971|gb -------------------------------------MNLVTV----FMVCL-MAISA--
ATTCE|ACEP_0000 ------------------------------------MHTMCIL----TLVSR-IYDRD--
gi|21103973|gb| ------------------------------------------------------------
gi|21103975|gb| ------------------------------------------------------------
gi|21103979|gb| ------------------------------------------------------------
gi|340709126|re --------MVFHRSTKLDQNRDRIYAPRLHLIAKKNKKKMRLW----MIIGA-LAVAT--
gi|383864839|re ---------------------------------------MRLW----VIIGA-LVVAI--
gi|380014047|re ------------------------------MIAFDRQQKMRVW----VVICA-LVVAI--
gi|328792342|re -------------------------MHTTPMIAFDRQQKMRLW----VIICA-LVVAI--
gi|350419248|re ------------------------------------------------------------
gi|345486197|re ---------------------------------------MRLW----MMLGA-LAVAV--
gi|21103977|gb| ------------------------------------------------------------
gi|307188089|gb ---------------------------------------MRLW----MLLAV-LSVTA--
gi|242007977|re ------------------------------------------------------------
gi|357615448|gb -----------------------------------------------------MC-----
gi|389614525|db -------------------------------------MKCLWL----FVLTV-LC-----
gi|500860|dbj|B -------------------------------------MKCLWL----LVITV-LC-----
BOMMO|BGIBMGA00 ------------------------------------------------------------
gi|11907531|dbj -------------------------------------MRAAAA----IPLLLLMALAG--
gi|270008212|gb QCHKELCCGWSEQKLTPPKSDTGDIVYFLRSCVRVDTMKVTVI----FVMNL-FVLTA--
gi|294610352|db ----------------------------------MSSMRTTVV----FVLVL-MMVLP--
gi|241620045|re ------------------------------------------------------------
gi|19171515|emb --------------------------------MIFCSVRAALL----FILVV-TLLIP--
gi|45544551|dbj ------------------------------------------------------------
gi|193712553|re -------------------------------------MKTTIVIKT-IVLMT-LVVDG--
gi|290753130|db ------------------------------------------------------------
gi|164521693|gb HPGSNRPESGHNPESLAAATDISSCRVFYLSEMGMSSAKMKHF----LLLAL-LLLCPQ-
LATCH|ENSLACP00 --------------------------------LQGD-MKTVTLILG-LKTLWVLAFST--
DANRE|ENSDARP00 --------------------------------MWSDIMRVLALLLA-VKAACVLLVSS--
HOMSA|gi|488565 -------------------------------------MGLWALLPGWVSATLLLALAA--
XENTR|ENSXETP00 -------------------------------------MRILTFLVG-LKTLWVLAFSS--
gi|197320531|gb -------------------------------------MKFCYL----IIICL-YPTLSL-
gi|184186101|re -------------------------------------MKLEWF----VAFFF-IPTASL-
gi|87042260|gb| -------------------------------------MKSLYF----ILFCC-ICLYSCE
gi|312376154|gb ------------------------------------------------------------
gi|3930521|gb|A -------------------------------------MKLVCTFWA-VVLLF-LAV----
gi|17226368|gb| ----------------------------------MPAPKGAAF----VLIAA-LACAFV-
gi|195338887|re SSLSQVE-GKQKSGRGRGSMWWGIAKV---GEPNNITP---------I-MYMD-PAIHST
gi|21711721|gb| SSLSQVE-GKQKSGRGRGSMWWGIAKV---GEPNNITP---------I-MYMD-PAIHST
gi|194762235|re SSIVPVE-GKQKSGRGRGSMWWGIAKV---GEPNNITP---------I-MYMD-PAIHST
gi|195147122|re ---SQAE-SKQKSGRGRGSMWWGIAKV---GEPNNMSP-----ITTGI-MYMD-PAIHST
gi|195117368|re ---ADAE-SKQKSGRGRGSMWWGIAKV---GEPNNISP-----ISTSI-MYMD-PAIHST
gi|195387788|re ---ADAE-SKQKSGRGRGSMWWGIAKV---GEPNNISP-----ISTGI-MYMD-PAIHST
gi|195052361|re ---ADAE-SKQKSGRGRGSMWWGIAKV---GEPNNISP-----ISTGI-MYMD-PAIHST
gi|60393086|gb| -ALTKAE-AKHKPGRGRGSMWWGIAKV---GEPNNISP-----ISSGI-MYVD-PAIHTT
gi|74054133|gb| ------------------------------------------------------------
gi|253735641|db -TFTKAE-AKHKPGRGRGSMWWGIAKV---GEPNNISP-----ISSGI-MYVD-PAIHTT
gi|170040118|re -TSAEVE-SKSKPGRGRGSMWWGIAKA---GEPNNISP-----LANGM-IYMD-PAIHAT
gi|157127174|re ----------------------GIAKA---GEPNNISP-----LANGM-IYMD-PAIHAT
gi|157013971|gb --WAEVE-SKSKPGRGRGSMWWGIAKA---GEPNNISP-----LAPGM-AYLD-PAIHAT
ATTCE|ACEP_0000 -YAPPER-STTYCWSNTAGSREGIAKA---GEPNNFLP-----MSAGS-IHME-P-VYAT
gi|21103973|gb| --------------------------A---GEPNNFLP-----MSAGS-IHME-P-VYAT
gi|21103975|gb| --------------------------A---GEPNNFLP-----MSASS-IHME-R-FYAT
gi|21103979|gb| --------------------------A---GEPNNFLP-----MSAAS-IHME-P-IYTT
gi|340709126|re -HASIAE-ITRNKNRGRGSMWWGIAKA---GEPNNFLP-----MSPAS-LHMD-PTVYAT
gi|383864839|re -HASIAE-ITRNKNRGRGSMWWGIAKA---GEPNNFLP-----MSPAS-LHMD-PTVYAT
gi|380014047|re -HASIAE-MPRNKNRGRGSMWWGIAKA---GEPNNFLP-----MSPAS-LHMD-PTVYAT
gi|328792342|re -HASIAE-MPRNKNRGRGSMWWGIAKA---GEPNNFLP-----MSPAS-LHMD-PTVYAT
gi|350419248|re -------------------MWWGIAKA---GEPNNFLP-----MSPAS-LHMD-PTVYAT
gi|345486197|re -PTLPAE-VRTNKNRGRGSMWWGIAKA---GEPNNLLP-----MPATS-LHMD-PSVYAT
gi|21103977|gb| --------------------------A---DEPNNFLP-----VSPTS-L-MD-SSVYAT
gi|307188089|gb -YVSLAE-ITKNKNRGRGSMWWGIAKA---DEPNNFLP-----VSPTS-M-LD-SSVYGN
gi|242007977|re -------------------------------------------MSPGV-LSMD-PSVHQT
gi|357615448|gb ---LRCE-AANKPRRGRGSMWWGIAKA---GEPNTLSP-----LSPGV-LYMD-PAVHAT
gi|389614525|db ---TRCE-AANKPRRGRGSMWWGIAKA---GEPNNISP-----MSPGV-LYMD-AGVHST
gi|500860|dbj|B ---LRCDTAGTKPRRGRGSMWWGIAKA---GEPNNLSP-----VSPGV-LFMD-PAVHAT
BOMMO|BGIBMGA00 ----------------------GIAKA---GEPNNLSP-----VSPGV-LFMD-PAVHAT
gi|11907531|dbj -LAARAA-TRAKMSRGRGSKWWGIAKA---GEPNNLLP-----LAPGE-LYMD-PAVHAT
gi|270008212|gb -L-GDVT-NARSKNRGKGSMWWGIAKA---GEPNNLSP-----ISPGG-VYMDLSSAHGT
gi|294610352|db -Y------LGTAKGRGRGSKWWGIARA---GEPNNLVSNSIKENSITN-SYLD-PDVHAT
gi|241620045|re ---------------------------------------------------------SVP
gi|19171515|emb -AQ-----AKPRHRGQRGSRWWSLAFS---EEPTNLVVDFH--RGNSM-NDRG-PAPHLP
gi|45544551|dbj -----------------GSRWWNIAYS---EEISNFVVDFH--RTNTL-VGRG-FAPHTL
gi|193712553|re -I-SRAY-AKHREGKYKGTHWWGIAKA---GEPNNLAP-----MTPGL-MLMD-SSSLTL
gi|290753130|db ------------------------------------------------------------
gi|164521693|gb --------AALPAKKNRGSRWWGLAHL---GHSNNLIL-----NSRGNPVYAD-QSLQ-P
LATCH|ENSLACP00 --------LSNTLAVNNSGRWWGLVNT---ASSTNLLT-----DSKNVQLVLD-PSLQ-L
DANRE|ENSDARP00 --------LTGTGAVNNSGRWWGIVNV---ASSGNLLT-----NSKNVQLVLD-PSLA-L
HOMSA|gi|488565 --------LPAALAANSSGRWWGIVNV---ASSTNLLT-----DSKSLQLVLE-PSLQ-L
XENTR|ENSXETP00 --------LSNTIAVNNSGKWWGIVNV---ASAGNVLPGS---DAQPVPLVLD-PSLQ-L
gi|197320531|gb --------GTGKAQGTTTGKWWGVASS---QQKSNLVV-----NRAGVPVVVD----QTP
gi|184186101|re --------LAKKTTAASSTKWWSMVLS---PSMTNSVT-----DTQGIINIID-PKLK-I
gi|87042260|gb| --------KKVKKSRLRAVRWWTLAHA---ESMNNMVV-----PQTQIQ-----NPTSLP
gi|312376154|gb ------------------------------------------------------------
gi|3930521|gb|A --------VPVERVHAVIGRWWGIASTVAVQEHANMVPGVA--RKPGSTIMLD-PKKH-P
gi|17226368|gb| --------CEAQARKYKGPKWWNLGLS---VDPSNLMSNEILSNSLSD-HHLS-ESVQRM
gi|195338887|re LRRKQRRLVRDNPGVLGA-LVKGANLAISECQHQFRNRRWNCSTR--NFSRG-KNLFGKI
gi|21711721|gb| LRRKQRRLVRDNPGVLGA-LVKGANLAISKCQHQFRNRRWNCSTR--NFSRG-KNLFGKI
gi|194762235|re LRRKQRRLVRDNPGVLGA-LVKGANLAISECQHQFRNRRWNCSTK--TISRG-KNLFGKI
gi|195147122|re LRRKQRRLVRDNPGVLGA-LVKGANLAISECQHQFRNRRWNCSTR--NFLRG-KNLFGKI
gi|195117368|re LRRKQRRLVRDNPGVLGA-LVKGANLAISECQHQFRNRRWNCSTR--NFLRG-KNLFGKI
gi|195387788|re LRRKQRRLVRDNPGVLGA-LVKGANMAISECQHQFRNRRWNCSTR--NFLRG-KNLFGKI
gi|195052361|re LRRKQRRLVRDNPGVLGA-LVKGANMAISECQHQFRNRRWNCSTR--NFLRG-KNLFGKI
gi|60393086|gb| LRRKQRHLVRDNPGVLGA-LVKGANLAISECQHQFRNRRWNCSTR--NFLRG-KNLFGKI
gi|74054133|gb| -------------------LVKGANLAISECQHQFRNRRWNCSTR--NFLRG-KNLFGKI
gi|253735641|db LRRKQRRLVRDNPGVLGA-LVKGANLAISECQHQFRNRRWNCSTR--NFLRG-KNLFGKI
gi|170040118|re LRRKQRRLARENPGVLAA-IAKGANMAINECQHQFRNRRWNCSTR--NFLRG-KNLFGKI
gi|157127174|re LRRKQRRLARENPGVLAA-IAKGANMAINECQHQFRNRRWNCSTR--NFLRG-KNLFGKI
gi|157013971|gb LRRKQRRLARENPGVLAA-IAKGANLAINECQHQFRTRRWNCSTR--NFLRG-KNLFGKI
ATTCE|ACEP_0000 LRRKQRRLARENPGVLMS-VSRGANQAIAECQHQFRNRRWNCSTK--NFLRG-KNLFGKI
gi|21103973|gb| LRRKQRRLARENPGVLMA-VSRGANQAIAECQYQFRNRRWNCSTK--NFLKG-KNLFGKI
gi|21103975|gb| LRRKQRRLAIENPGVLMA-VSRGANQAIAECQHQFRNRRWNCSTK--NFLRG-KNLFGKI
gi|21103979|gb| LRRKQRKLARDNPGVLMA-VARGANQAITECQHQFRNRRWNCSTK--NFLRG-KNLFGKI
gi|340709126|re LRRKQRRLARENPGVLMA-VARGANQAIAECQHQFRNRRWNCSTK--NFLRG-KNLFGKI
gi|383864839|re LRRKQRKLARENPGVLMA-VARGANQAIAECQHQFRNRRWNCSTK--NFLRG-KNLFGKI
gi|380014047|re LRRKQRRLARENPGVLMA-VARGANQAIAECQHQFRNRRWNCSTK--NFLRG-KNLFGKI
gi|328792342|re LRRKQRRLARENPGVLMA-VARGANQAIAECQHQFRNRRWNCSTK--NFLRG-KNLFGKI
gi|350419248|re LRRKQRRLARENPGVLMA-VARGANQAIAECQHQFRNRRWNCSTK--NFLRG-KNLFGKI
gi|345486197|re LRRKQRRLARENPGVLMA-VARGANQAISECQHQFRNRRWNCSTK--NFLRG-KNLFGKI
gi|21103977|gb| LRRKQRRLVRENPGVLQA-VARGANQAVAECQHQFRNRRWNCSTK--NFLRG-KNLFGKI
gi|307188089|gb LRRKQKKLIRDNPGVLQA-ISRGANQAVAECQYQFRNRRWNCSTK--NFLRG-KNLFGKI
gi|242007977|re LRRKQRRLARENPGVLVA-VAKGANQAILECQYQFRDRRWNCSTR--NFLRG-KNLFGKI
gi|357615448|gb LRRKQRRLARENPGVLAA-VAKGASMAVAECQHQFKYRRWNCSTR--NFLRG-KNMFGKI
gi|389614525|db LRRKQRRLAKENPGVLTA-VAKGANMAVAECQHQFKYRRWNCTTR--NFLRG-KNLFGKI
gi|500860|dbj|B LRRKQRRLARENPGVLAA-VAK-AQYAFAECQHQFKYRRWNCSTR--NFLRG-KNLFGKI
BOMMO|BGIBMGA00 LRRKQRRLARENPGVLAA-VAKGASMAVAECQHQFKYRRWNCSTR--NFLRG-KNLFGKI
gi|11907531|dbj LRRKQRRLVRDHPGVLLA-VVKGANQAIGECQFQFRNRRWNCSTK--NFFRG-KNLFGKI
gi|270008212|gb LRRKQRRLARENPGLLVA-LHKGANNAIHECQHQFRNQRWNCSTR--AFPRG-KNLFGKI
gi|294610352|db LRRKQRRLVRDHPGVVVA-VAKGAKQAISECKHQFKNRRWNCPTK--DFHRG-RNLFGKI
gi|241620045|re LRRKQRGLVRANPGSLQA-IGRGMRLAISECKHQFRDRRWNCPTP--EYMRG-KSLFGKI
gi|19171515|emb LRKKQRRLVRDNPGAMQA-IGRGVKVAISECKYQFKKRRWNCPTA--DHARG-KNIFGKI
gi|45544551|dbj LRKKQRRLVRENPGAMTA-IGRGVRLSISECKHQFKKRRWNCPTI--DYTRG-RNIFGKI
gi|193712553|re LRNKQRRLIREHPGVLQA-ISRGVNMALQECQHQFRNRRWNCSTK--NFLTG-KNLFGKI
gi|290753130|db -------------------------------------RRWNCSTK--NFLRG-KNLFGKI
gi|164521693|gb LNRKQRRLVRENPGTLGS-VTKGAHMAIAECKYQFRNRRWNCPTT--DY-----------
LATCH|ENSLACP00 LSRKQRKLIRQNPGILHS-IASGLQSAIKECRWQFRNRRWNCPTT-----QS-PNVFGKI
DANRE|ENSDARP00 LSRRQRKLIRQNPGILHA-IAAGLHTAIKECKWQFRNRRWNCPTT-----HS-PNVFGKI
HOMSA|gi|488565 LSRKQRRLIRQNPGILHS-VSGGLQSAVRECKWQFRNRRWNCPTA-----PG-PHLFGKI
XENTR|ENSXETP00 LSRRQKRLIRQNPGILQS-ITRGLHSAIRECKWQFRNRRWNCPTG-----TG-NQVFGKI
gi|197320531|gb LNKKQRKLIRLHPGSLSA-ITNSVGMSKTECKWQFKERRWNCPTN--KNDRGGRNLFGNI
gi|184186101|re LNKRQRRLVSQNRGTLAA-INRAVKMAVSECRYQFKERRWNCPTF--NKDRGPESLFGKI
gi|87042260|gb| LTRKQRNLVSKNPGSIRA-VYQGAKQAILECKYQFKNRRWNCPTY--ESGRG-VSVFGKI
gi|312376154|gb ------------------------------------------------------------
gi|3930521|gb|A LNKKQRRLVRRNPGDAGEHRDRRPMLAIKECHHQFSKWRWNCPVN--TSDHV-NSVFGNI
gi|17226368|gb| LRKKQRRLIRENDGVLVA-IAEGAKKAAKSCRYQFRSRRWDCSASRKKKIKR-RRLFGRI
gi|195338887|re VDR--------------------------------------GCRETSFIYAITSAAVTHS
gi|21711721|gb| VDR--------------------------------------GCRETSFIYAITSAAVTHS
gi|194762235|re VDR--------------------------------------GCRETSFIYAITSAAVTHS
gi|195147122|re VDR--------------------------------------GCRETGFIYAITSAAVTHS
gi|195117368|re VDR--------------------------------------GCRETGFIYAITSAAVTHS
gi|195387788|re VDR--------------------------------------GCRETGFIYAITSAAVTHS
gi|195052361|re VDR--------------------------------------GCRETGFIYAITSAAVTHS
gi|60393086|gb| VDR--------------------------------------GCRETGFIYAITSAAVTHS
gi|74054133|gb| VDR--------------------------------------GCRETGFIYSITSAAVTHS
gi|253735641|db VDR--------------------------------------GCRETGFIYAITSAAVTHS
gi|170040118|re VER--------------------------------------GCRETAFIYAITSAAVTHS
gi|157127174|re VER--------------------------------------GCRETAFIYAITSAAVTHS
gi|157013971|gb VER--------------------------------------GCRETAFIYAITSAAVTHS
ATTCE|ACEP_0000 VDR--------------------------------------GCRETAFIYAITSAAVTHS
gi|21103973|gb| VDR--------------------------------------GCRETAFIYAITSAAVTHS
gi|21103975|gb| VDR--------------------------------------GCRETAFIYAITSAAVTHS
gi|21103979|gb| VDR--------------------------------------GCRETAFVYAIASAAVTHS
gi|340709126|re VDR--------------------------------------GCRETAFIYAITSAAVTHS
gi|383864839|re VDR--------------------------------------GCRETAFIYAITSAAVTHS
gi|380014047|re VDR--------------------------------------GCRETAFIYAITSAAVTHS
gi|328792342|re VDR--------------------------------------GCRETAFIYAITSAAVTHS
gi|350419248|re VDR--------------------------------------GCRETAFIYAITSAAVTHS
gi|345486197|re VDR--------------------------------------GCRETAFIYAITSAAVTHS
gi|21103977|gb| VDK--------------------------------------GCRETAFIYAITSAAVTHS
gi|307188089|gb VDK--------------------------------------GCRETAFIYAITSAAVTHS
gi|242007977|re VDR--------------------------------------GCRETAFIYAITSAAVTHA
gi|357615448|gb VDR--------------------------------------GCRETAFLYAITSAGVTHA
gi|389614525|db VDR--------------------------------------GCRETAFIYAITSAGVTHA
gi|500860|dbj|B VDR--------------------------------------GCRETAFIYAITSAGVTHS
BOMMO|BGIBMGA00 VDRENRSILIVEVQKSLNRYLEEVDAPAVPIVMIELIISRVGCRETAFIYAITSAGVTHS
gi|11907531|dbj VDR--------------------------------------GCRETAFIYAITSAGVTHA
gi|270008212|gb VDK--------------------------------------GCRETAFIYAITSAAVTHA
gi|294610352|db VDR--------------------------------------ACRETAFIYALMSAAVTHS
gi|241620045|re VHR--------------------------------------GCRETAFVYAITSAGVAHA
gi|19171515|emb VQR--------------------------------------GCRETAFLYAITSAGVTHS
gi|45544551|dbj VQK--------------------------------------GCRETAFLYAITSAGVTHA
gi|193712553|re VDR--------------------------------------GFRETAFIYAITSAGVTHA
gi|290753130|db VDR--------------------------------------GCRETAFIYAITSAAVTHA
gi|164521693|gb -SH--------------------------------------GCRETSFIYAITSAAVTHQ
LATCH|ENSLACP00 VNR--------------------------------------GCRETAFIFAITSAGVTHS
DANRE|ENSDARP00 VNR--------------------------------------GCRETAFVFAITSAGVTHA
HOMSA|gi|488565 VNR--------------------------------------GCRETAFIFAITSAGVTHS
XENTR|ENSXETP00 INR--------------------------------------GCRETAFVFAITSAGVTHS
gi|197320531|gb LES--------------------------------------GCRETAFIYAITASAVAHS
gi|184186101|re LNS--------------------------------------GCRETSFIYSITSAAVTHS
gi|87042260|gb| LQK--------------------------------------GCRETAFIYAITSAAISHA
gi|312376154|gb ------------------------------------------------------------
gi|3930521|gb|A LLR--------------------------------------GCTQTAFIYAVMSAAVAHE
gi|17226368|gb| VSI--------------------------------------PCRETAFVYALLSAAVLHS
gi|195338887|re IARACSEGTIESCTCDYSHQSRSP--------QANHQAGSVAGVRDWEWGGCSDNIGFGF
gi|21711721|gb| IARACSEGTIESCTCDYSHQSRSP--------QANHQAGSVAGVRDWEWGGCSDNIGFGF
gi|194762235|re IARACSEGTIESCTCDYSHQSRSP--------QANHQAGSVAGVRDWEWGGCSDNIGFGF
gi|195147122|re IARACSEGTIESCTCDYSHQSRSP--------QANHQAGSVAGVRDWEWGGCSDNIGFGF
gi|195117368|re IARACSEGTIESCTCDYSHQTRSP--------QANHQAGSVAGVRDWEWGGCSDNIGFGF
gi|195387788|re IARACSEGTIESCTCDYSHQTRSP--------QANHQAGSVAGVRDWEWGGCSDNIGFGF
gi|195052361|re IARACSEGTIESCTCDYSHQTRSP--------QANHQAGSVAGVRDWEWGGCSDNIGFGF
gi|60393086|gb| IARACSEGSIESCTCDYSHQSRSP--------QANAQAGSVAGVRDWEWGGCSDNIGFGF
gi|74054133|gb| IARACSEGSIESCTCDYSHQSRSP--------QANAQAGSVAGVRDWEWGGCSDNIGFGF
gi|253735641|db IARACSEGSIESCTCDYSHQSRSP--------QANVQAGSVAGVRDWEWGGCSDNIGFGF
gi|170040118|re IARACSEGSIESCTCDYSHQSRAP--------QAN-SMGAVAGVRDWEWGGCSDNIGFGF
gi|157127174|re IARACSEGSIESCTCDYSHQSRAP--------QAS-TMGAVAGVRDWEWGGCSDNIGFGF
gi|157013971|gb VARACSEGSIESCTCDYSHHNREP--------QMN-NMGVVAGVGDWEWGGCSDNIGFGF
ATTCE|ACEP_0000 IARACSEGSIQSCSCDYTHQSRVS-----------------SAVRDWEWGGCSDNIGYGF
gi|21103973|gb| IARACSEGSIQSCSCDYTHQSHAS-----------------SAVRDWEWGGCSDNIGYGF
gi|21103975|gb| IARACSEGSIQLCSCDYTHQSRAS-----------------SAVRDWEWGGCSDNIGYGF
gi|21103979|gb| IARACSEGSIQSCSCDYTHQSRAS-----------------SAVRDWEWGGCSDNIGYGF
gi|340709126|re IARACSEGSIQSCSCDYTHQSRPP-----------------SGTRDWEWGGCSDNIGYGF
gi|383864839|re IARACSEGTIQSCSCDYTHQSRPP-----------------SAVRDWEWGGCSDNIGYGF
gi|380014047|re IARACSEGSIQSCSCDYTHQSRPP-----------------SATRDWEWGGCSDNIGYGF
gi|328792342|re IARACSEGSIQSCSCDYTHQSRPP-----------------STTRDWEWGGCSDNIGYGF
gi|350419248|re IARACSEGSIQSCSCDYTHQSRPP-----------------SGTRDWEWGGCSDNI----
gi|345486197|re IARACSEGSIQSCSCDYSHQSRGP-----------------SGVRDWEWGGCSDNIGYGF
gi|21103977|gb| IARACSEGSIQSCSCDYTHQSRTS-----------------SAVRDWEWGGCSDNIGYGF
gi|307188089|gb IARACSEGSIQSCSCDYTHQSRTS-----------------SAVRDWEWGGCSDNIGYGF
gi|242007977|re VARACSEGAIKSCTCDYSHQGRGPLPTRIAHHQARGPTNTLPGVRDWEWGGCSDNIGFGF
gi|357615448|gb VSRACAEGAIESCTCDYSHVDRAP--------HRS-RAATAANVRVWKWGGCSDNIGFGF
gi|389614525|db VSRACAEGSIESCTCDYSHLERTP--------HRT-RAAAAANVRVWKWGGCSDNIGFGF
gi|500860|dbj|B LARACREASIESCTCDYSHRPRAA---------QN-PVGGRANVRVWKWGGCSDNIGFGF
BOMMO|BGIBMGA00 VARACAEGSIESCTCDYSHIDRVP--------HRT-RSAAAANVRVWKWGGCSDNIGFGF
gi|11907531|dbj IARACAEGSIQSCTCDYRHAGRVA--------GGRGGGGGGGKKPDWEWGGCSDNIEYGF
gi|270008212|gb IARACSEGSIDTCNCETHYKGRPH-------VSGNGGGAAVAGVRDFEWGGCSDNIGFGF
gi|294610352|db VSRACSEGAIESCTCDYSQRGPSG--------------------ADWEWGGCSDNIQFGV
gi|241620045|re VSRACSEGAIDTCTCDYRQRGPSG--------------------LDWEWGGCSDNVHFGY
gi|19171515|emb LSRACREGLVSTCNCDYRRRGPSG--------------------LHWEWGGCSDNIDFGA
gi|45544551|dbj MARACREGLVTSCSCDYKRRGPSG--------------------LDWEWGGCSDNIEFGS
gi|193712553|re VSRACAEGVIETCTCDTTHQRRGP-----------YIQNSVPGVKDWEWGGCSDNIDFGY
gi|290753130|db VSRACSEGSIESCTCDYSQRGPAAALGSIAT-NGASNGVVGPGQRDWEWGGCSDNLAFGY
gi|164521693|gb IARSCSEGTIESCTCDYRKRGPSG--------------------RDWEWGGCSDNIEFGY
LATCH|ENSLACP00 VTRSCSEGSIESCTCDYRRRGPGG--------------------PDWHWGGCSDNIDFGR
DANRE|ENSDARP00 VARSCSEGAIESCTCDYRRRGPGG--------------------PDWHWGGCSDNVEFGR
HOMSA|gi|488565 VARSCSEGSIESCTCDYRRRGPGG--------------------PDWHWGGCSDNIDFGR
XENTR|ENSXETP00 VARSCSEGSIESCSCDYRRRGPGG--------------------PDWHWGGCSDNIEFGR
gi|197320531|gb VARSCSEGSIETCNCDYEKRGKGG--------------------KGWEWGGCSDNADFGS
gi|184186101|re VARSCSEGTIESCTCDYKFRGDSG--------------------NDWEWGGCSDNADFGH
gi|87042260|gb| VARACATGTIYTCTCDYSAKPPGH-------------ETVTPDSSNWKWGGCSDNAKFGH
gi|312376154|gb ---------------------------------MNSMGAVAAGVGDWEWGGCSDNIGFGF
gi|3930521|gb|A VGRNCAEGTIETCSCDYRSKGPAG--------------------EDWEWGGCSDNVEFGK
gi|17226368|gb| VTRACTEGAVHSCSCHYTAKG-----------------------DDWEWGGCSENIDFGY
:.*****:*
gi|195338887|re KFSREFVDTGERGRN-LREKMNLHNNEAGR------A--------HVQAEMRQECKCHGM
gi|21711721|gb| KFSREFVDTGERGRN-LREKMNLHNNEAGR------A--------HVQAEMRQECKCHGM
gi|194762235|re KFSREFVDTGERGRN-LREKMNLHNNEAGR------A--------HVQAEMRQECKCHGM
gi|195147122|re KFSREFVDTGERGRN-LREKMNLHNNEAGR------A--------HVQAEMRQECKCHGM
gi|195117368|re KFSREFVDTGERGRN-LREKMNLHNNEAGR------A--------HVQAEMRQECKCHGM
gi|195387788|re KFSREFVDTGERGRN-LREKMNLHNNEAGR------A--------HVQAEMRQECKCHGM
gi|195052361|re KFSREFVDTGERGRN-LREKMNLHNNEAGR------A--------HVQAEMRQECKCHGM
gi|60393086|gb| KFSREFVDTGERGRN-LREKMNLHNNEAGR------A--------HVQAEMRQECKCHGM
gi|74054133|gb| KFSREFVDTGERGRN-LREKMNLHNNEAGR------A--------HVQAEMRQECKCHGM
gi|253735641|db KFSREFVDTGERGRN-LREKMNLHNNEAGR------A--------HVQAEMRQECKCHGM
gi|170040118|re KFSREFVDTGERGRT-LREKMNLHNNEAGR------S--------HVQSEMRQECKCHGM
gi|157127174|re KFSREFVDTGERGRT-LREKMNLHNNEAGR------A--------HVQSEMRQECKCHGM
gi|157013971|gb KFSRDFVDTGERGRT-LREKMNLHNNEAGR------A--------HVQAEMRQECKCHGM
ATTCE|ACEP_0000 KFSREFVDTGERGRN-LREKMNLHNNEAGR------A--------HVTSEMRQECKCHGM
gi|21103973|gb| KFSREFVDTGERGRN-LREKMNLHNNEAGR------A--------HVTSEMRQECKCHGM
gi|21103975|gb| KFSREFVDTGERGRN-LREKMNLHNNEAGR------A--------HVTSEMRQECKCHGM
gi|21103979|gb| KFSREFVDTGERGRN-LREKMNLHNNEAGR------A--------HVTSEMRQECKCHGM
gi|340709126|re KFSREFVDTGERGRN-LREKMNLHNNEAGR------A--------HVSSEMRQECKCHGM
gi|383864839|re KFSREFVDTGERGRN-LREKMNLHNNEAGR------A--------HVSSGMRQDCKCHGM
gi|380014047|re KFSREFVDTGERGRN-LREKMNLHNNEAGR------A--------HVSSEMRQECKCHGM
gi|328792342|re KFSREFVDTGERGRN-LREKMNLHNNEAGRAVSFFFA--------HVSSEMRQECKCHGM
gi|350419248|re ---------GERGRN-LREKMNLHNNEAGR------A--------HVSSEMRQECKCHGM
gi|345486197|re RFSREFVDTGERGRN-LREKMNLHNNEAGR------T--------HVSAEMRQECKCHGM
gi|21103977|gb| KFSREFVDTGERGRN-LREKMNLHNNEAGR------T--------HVSSEMRQECKCHGM
gi|307188089|gb TFSRDFVDTGERGRN-LREKMNLHNNEAGR------TGVVSVLLQHVSSEMRQECKCHGM
gi|242007977|re KFSRAFVDTGEKGRN-LREKMNLHNNEAGR------V--------HVSMGMRQECKCHGM
gi|357615448|gb RFSREFVDTGERGKT-LREKMNLHNNEAGR------M--------HVQTEMRQECKCHGM
gi|389614525|db RFSREFVDTGERGKT-LREKMNLHNNEAGR------A--------HVQSEMRQECKCHGM
gi|500860|dbj|B RFSREFVDTGERGKT-LREKMNLHNNEAGR------R--------HVQTEMKQECKCHGM
BOMMO|BGIBMGA00 RFSREFVDTGERGKT-LREKMNLHNNEAGR------A--------HVQTEMKQECKCHGM
gi|11907531|dbj KFSRDFVDTGERGRT-LREKMNLHNNEAGR------L--------HVREEMRKECKCHGM
gi|270008212|gb TVSREFVDAGERGKT-IREKMNLHNNEAGR------W--------HVKDQMRQECKCHGM
gi|294610352|db KFSREFVDAGEKGRD-IRYMMNLHNNEAGR------V--------HVSTEMRQECKCHGM
gi|241620045|re KFARAFVDAAERGRD-LRFVINLHNNEAGR------L--------QVTTETRRECKCHGM
gi|19171515|emb KFSRQFVDASERGKD-LRYIMNLHNNEAGR------A--------HVIGGMRRQCKCHGM
gi|45544551|dbj KFTKQFVGAAERGKD-LRFTMNLHNNEAGR------T--------HVAAGMRRQCKCHGM
gi|193712553|re KFSRMFVDTGERGRS-LREKMNLHNNEAGR------M--------HVQSEMKQECKCHGM
gi|290753130|db KFSREFVDTGERGRS-LREKMNLHNNEAGR------A--------HVSAEMRQECKCHGM
gi|164521693|gb KFAQDFVDAAEKGRD-LKYMINLHNNEAGR------V--------HVSSEMRQECKCHGM
LATCH|ENSLACP00 VFGREFVDSSERGRD-LRYLMNLHNNEAGR------V--------TVFSEMRQECKCHGM
DANRE|ENSDARP00 MFGREFVDSSERGRD-LRYLTNLHNNEAGR------M--------TVASEMQQECKCHGM
HOMSA|gi|488565 LFGREFVDSGEKGRD-LRFLMNLHNNEAGR------T--------TVFSEMRQECKCHGM
XENTR|ENSXETP00 FIGREFVDSSERGRD-LKYLVNLHNNQAGR------L--------TVLTEMRQECKCHGM
gi|197320531|gb NFSRKFVDAGEKGRD-LRYYMNKHNNAAGR------R--------IVTDNMRRECKCHGM
gi|184186101|re RFGKKFVDSGEKGRD-LRHAMNLHNNEAGR------K--------TVSSEMRRECKCHGM
gi|87042260|gb| KFGRRFVDVVEKGQD-IRYMMNLHNNAAGR------V--------HVTSQMTQACKCHGM
gi|312376154|gb KFSREFVDTGERGRT-LREKMNLHNNEAGR------A--------HVQAEMRQECKCHGM
gi|3930521|gb|A QFAKQFVDAGEKTKDSVRYLVNMHNNEAGR------V--------AVAENLRRECKCHGM
gi|17226368|gb| RFSRHFVDAGEKTHE-IRAAMNLHNNEAGR------Q--------HVRAAMRSECKCHGM
*: : :: * *** *** * ******
gi|195338887|re SGSCTVKTCWMRLANFRVIGDNLKARFDGATRVQVTNSLRATNALAPV----SPNAA-GS
gi|21711721|gb| SGSCTVKTCWMRLANFRVIGDNLKARFDGATRVQVTNSLRATNALAPV----SPNAA-GS
gi|194762235|re SGSCTVKTCWMRLANFRVVGDNLKARFDGATRVQVNNHRSQNS--IPV---ISPNAV-GS
gi|195147122|re SGSCTVKTCWMRLANFRVIGDNLKARFDGATRVQVSNSLRQSANAVAV---VSPNAAMGS
gi|195117368|re SGSCTVKTCWMRLANFRVIGDNLKARFDGATRVQVSNSLRQSSNAVPV---VNPNAA-GP
gi|195387788|re SGSCTVKTCWMRLANFRVIGDNLKARFDGATRVQVSNSLRQSSNAVAV---VSPNAA-GS
gi|195052361|re SGSCTVKTCWMRLANFRVIGDNLKARFDGATRVQVSNSLRQSSNAVAV---ISPNAA-GS
gi|60393086|gb| SGSCTVKTCWMRLANFRVIGDNLKDRFDGASRVMMSNSLRPSGSANAVGTANSPNAV---
gi|74054133|gb| SGSCTVKTCWMRLANFRVIGDNLKDRFDGASRVTMSNSLRPSGSANAVPAANSPNAV---
gi|253735641|db SGSCTVKTCWMRLANFRVIGDNLKDRFDGASRVMMSNSLRPSGSANAA-NAGSPNAV---
gi|170040118|re SGSCTVKTCWMRLPSFRVVGDLLKDRFDGASRVMVSNSLRTT-VNEAT----LSNRA-NP
gi|157127174|re SGSCTVKTCWMRLPSFRVVGDLLKDRFDGASRVMVSNSLRTS-VNEAT----LSNRA-NP
gi|157013971|gb SGSCTMKTCWMRLNSFRTIGDILKDRFDGASRVMVSNSLRSTSVNENT----LTNRA-GS
ATTCE|ACEP_0000 SGSCTVKTCWMRLPNFRVVGDNLKDRFDGASRVMVSNSDRARVTNNAI----TSNSA---
gi|21103973|gb| SGSCTVKTCWMRLPNFRVVGDNLKDRFDGASRVMVSNSDRARVNNNAI----TSNSA---
gi|21103975|gb| SGSCTVKTCWMRLPNFRLVGDNLKDRFDGASRVMVSNSDRVRVSNNAI----TSNSA---
gi|21103979|gb| SGSCTVKTCWMRLPNFRVVGDNLKDRFDGASRVMVSNSDRVRVNNNAI----MSNSA---
gi|340709126|re SGSCTVKTCWMRLPNFRVVGDNLKDRFDGASRVMVSNSDRVRGNGNAI----VSNSA---
gi|383864839|re SGSCTVKTCWMRLPNFRVVGDNLKDRFDGASRVMVSNSDRVRGNGNAI----VSNSA---
gi|380014047|re SGSCTVKTCWMRLPNFRVVGDNLKDRFDGASRVMVSNSDRVRGNGNAI----VSNSA---
gi|328792342|re SGSCTVKTCWMRLPNFRVVGDNLKDRFDGASRVMVSNSDRVRGNGNAI----VSNSA---
gi|350419248|re SGSCTVKTCWMRLPNFRVVGDNLKDRFDGASRVMVSNSDR--------------------
gi|345486197|re SGSCTVKTCWMRLPSFRQVGDNLKDRFDGASRVMVSNSDRARGVSNAI----TSNSA---
gi|21103977|gb| SGSCTVKTCWMRLPSFRVVGDNLKDRFDGASRVMVSNSDRVRSNV-------HVNSA---
gi|307188089|gb SGSCTVKTCWMRLPSFRVVGDNLKDRFDGASRVMVSNSDRVRSNANL-------------
gi|242007977|re SGSCTVKTCWMRLPTFREIGDSLKDRFDGASRVMLSNAGSMRSLN---------------
gi|357615448|gb SGSCTVKTCWMRLPSFRSVGDALKDRFDGASRVMMPNTEVEAPVQ---------------
gi|389614525|db SGSCTVKTCWMRLPSFRSVGDALKDRFDGASRVLMSNSDVETPVL---------------
gi|500860|dbj|B SGSCTVKTCWMRLPSFRSVGDSLKDRFDGASRVMLSKADVETPAQ---------------
BOMMO|BGIBMGA00 SGSCTVKTCWMRLPSFRSVGDSLKDRFDGASRVMLSKAELETPAQ---------------
gi|11907531|dbj SGSCTVKTCWMRLPHFRVVGDNLKDRFDGASRVLVGNAGSPRGPG---------------
gi|270008212|gb SGSCTIKTCWMRLPPFRVIGDLLKDRFDGASHVAASGHHRNNNNA---------------
gi|294610352|db SGSCTVRTCWMRLPFFRVVGDNLKDRFDGASRVLISNTGRTPGNG---------------
gi|241620045|re SGSCTVKTCWMRLPSFRDVGNQLKERFDGASKVLVSNQGNFRGFR---------------
gi|19171515|emb SGSCTVQTCWMQLSPFRTIGDGLKDRFDGASRVLVTNRGNVR------------------
gi|45544551|dbj SGSCTVQTCWMQLPPFRAVGDGLKDRFDGASRVLVTNRGNVR------------------
gi|193712553|re SGSCTVKTCWMRLPIFRSIGDNLKDRFDGASRVMVGNAGGLRRMRSDDNTPNSHYEQ---
gi|290753130|db SGSCTVKTCWMRLPNFRAVGDNLKDRFDGASRVMVSNAGSLRGNVAAL-----SNSA---
gi|164521693|gb SGSCTVKTCWMRLPLFRSVGDILKDRFDGASRVLVGNRGNNRGSR---------------
LATCH|ENSLACP00 SGSCTVKTCWMRLPTFRSIGDFLKDRFDGASRVIYGNKGSNRAS----------------
DANRE|ENSDARP00 SGSCTVRTCWMRLPSFRLVGDYLKDRFDGASRVVYANKGSNRAS----------------
HOMSA|gi|488565 SGSCTVRTCWMRLPTLRAVGDVLRDRFDGASRVLYGNRGSNRAS----------------
XENTR|ENSXETP00 SGSCSLRTCWMRLPPFRSVGDALKDRFDGASKVTYSNNGSNRWG----------------
gi|197320531|gb SGSCQVKTCWMRLPTFREVGDILKERFDGASQIAQTNNGHNRGTR---------------
gi|184186101|re SGSCTIETCWMRLPTFRTVGELIKERFDGASRVTMRNDGSPS------------------
gi|87042260|gb| SGSCQIKTCWMKLPTFRRVGDLLKDRFDGASRVLPGNAGSDRRRRRKF------------
gi|312376154|gb SGSCTMKTCWMRLNSFRTIGDILKDRFDGASRVMVSNSLLRNGGGGGGGGGGGGGGGGGG
gi|3930521|gb|A SGSCTLKTCWMRLPNFRDVGDSLKEKFDGASKVAFPDIGNNRGSR---------------
gi|17226368|gb| SGSCTVKTCWSRLPHFKQIGDRLKEKFDGASRVMSRHTAHMQRRSNSR------------
**** :.*** :* :: :*: :: :****:::
gi|195338887|re NS-------VSSNGLIIPQSGLVYGEEEERMLNDHMPD-ILLENSHPISKIHHPNMPSPN
gi|21711721|gb| NS-------VGSNGLIIPQSGLVYGEEEERMLNDHMPD-ILLENSHPISKIHHPNMPSPN
gi|194762235|re NT-------AGPNAL-MPQS-VVYGEEEERMLNDHMPDSLLLENSHPS---------KSN
gi|195147122|re NS------NGGSNGL-LQSA-VSVYEEEERMLNDHMPD-LLLDNTHLSSKIHHPNMPSPN
gi|195117368|re NSVVVAGVGVGGNG--LPPS-VSGYDDEERMLNDHMPE-LLLDNSHPNSKQHHPNMPSPN
gi|195387788|re NS-VVGGVSGGGNG--LPAS-VSGYDDEERMLNDHMPE-LLLDNSHPNGKQHHPNMPSPN
gi|195052361|re NG-VVGGVSNGGNG--LPPS-VNGYDDEERMLNDHIPE-LLLDNNHPNSKQHHPNMPSPN
gi|60393086|gb| ---------GSSSSVISPNAASPNAYDEDRMLNDE------------HVVKHHPNMPSPN
gi|74054133|gb| ---------G-SAAVISPNAASPNAYDEDRMLNDE------------HVVKHHPNMPSPN
gi|253735641|db ---------G-PTNGVLPNVASSNGYEDDRMLNDE------------HVLKHHPNMPSPN
gi|170040118|re NGLKS-PNQVGSS----PNS----------------------------------------
gi|157127174|re NGLKA-QNQLGGSSPGGPNS----------------------------------------
gi|157013971|gb ANLKTNANSVGGSA--SPNS----------------------------------------
ATTCE|ACEP_0000 ------------------------------------------------------------
gi|21103973|gb| ------------------------------------------------------------
gi|21103975|gb| ------------------------------------------------------------
gi|21103979|gb| ------------------------------------------------------------
gi|340709126|re ------------------------------------------------------------
gi|383864839|re ------------------------------------------------------------
gi|380014047|re ------------------------------------------------------------
gi|328792342|re ------------------------------------------------------------
gi|350419248|re ------------------------------------------------------------
gi|345486197|re ------------------------------------------------------------
gi|21103977|gb| ------------------------------------------------------------
gi|307188089|gb ------------------------------------------------------------
gi|242007977|re ------------------------------------------------------------
gi|357615448|gb ------------------------------------------------------------
gi|389614525|db ------------------------------------------------------------
gi|500860|dbj|B ------------------------------------------------------------
BOMMO|BGIBMGA00 ------------------------------------------------------------
gi|11907531|dbj ------------------------------------------------------------
gi|270008212|gb ----------------------------------------------------HQNRPPKN
gi|294610352|db ------------------------------------------------------------
gi|241620045|re ------------------------------------------------------------
gi|19171515|emb ------------------------------------------------------------
gi|45544551|dbj ------------------------------------------------------------
gi|193712553|re --------------------------------------------------EQQQEQPQDQ
gi|290753130|db -----------------------------------------------------SSGPVSN
gi|164521693|gb ------------------------------------------------------------
LATCH|ENSLACP00 ------------------------------------------------------------
DANRE|ENSDARP00 ------------------------------------------------------------
HOMSA|gi|488565 ------------------------------------------------------------
XENTR|ENSXETP00 ------------------------------------------------------------
gi|197320531|gb ------------------------------------------------------------
gi|184186101|re ------------------------------------------------------------
gi|87042260|gb| ------------------------------------------------------------
gi|312376154|gb GAGAAGGAGGGAGGGLGGPGGINEHTLTNRAGSSSSSNGGGNGNGNGNGNGGPKNGLGGN
gi|3930521|gb|A ------------------------------------------------------------
gi|17226368|gb| ------------------------------------------------------------
gi|195338887|re SLPQ-AGQRGGR---NGR------------RQGRK-------------------------
gi|21711721|gb| SLPQ-AGQRGGR---NGR------------RQGRK-------------------------
gi|194762235|re SLPQ-AGQ-PNR---NGH------------RRGRK-------------------------
gi|195147122|re SLPM-AGA-RSR---NGR------------RQGRK-------------------------
gi|195117368|re SLPV-AGA-RSRG--HGR-----------GRLGRK-------------------------
gi|195387788|re SLPV-AGA-RARG--HGR-----------GRQGRK-------------------------
gi|195052361|re SLPV-AGA-RSRG--HGR-----------GRQGRK-------------------------
gi|60393086|gb| SLPTSSNA-VSRNSVRGR-----------QRQGKK-------------------------
gi|74054133|gb| SLPT-SNA-VSRNSVRGR-----------QRQGKK-------------------------
gi|253735641|db SLPN-PNS-ASRNSVRGR-----------QRQGKK-------------------------
gi|170040118|re ---------VSSNSIHAR-----------SHQQKK-------------------------
gi|157127174|re ---------VSSNSIHAR-----------SHQQKKINRSF-----GDFQRWTKFLSKIFE
gi|157013971|gb ---------VLSNSIHAR-----------GHQQKRASERSLISLKTIHQYLTCFVSPLFF
ATTCE|ACEP_0000 -----------SNSVHQH-----------RDGLGR-------------------------
gi|21103973|gb| -----------SNSVHQH-----------REGLGR-------------------------
gi|21103975|gb| -----------SNSVHQH-----------RDGLGR-------------------------
gi|21103979|gb| -----------SNSVHQH-----------REGLGR-------------------------
gi|340709126|re -----------SNSVHGH-----------REGLGR-------------------------
gi|383864839|re -----------SNSVHGH-----------RDGLGR-------------------------
gi|380014047|re -----------SNSVHGH-----------REGLGR-------------------------
gi|328792342|re -----------SNSVHGH-----------REGLGR-------------------------
gi|350419248|re -------------------------------GLGR-------------------------
gi|345486197|re -----------SNSVHAH-----------REGLSR-------------------------
gi|21103977|gb| -----------SNSVHQH-----------RDGLAR-------------------------
gi|307188089|gb -----------ANSVHQH-----------RDGLSR-------------------------
gi|242007977|re ------------------------------SGRKK-------------------------
gi|357615448|gb -----------RNDAAPH-----------R--VPR-------------------------
gi|389614525|db -----------RNDPGAH-----------R--VPR-------------------------
gi|500860|dbj|B -----------RNEAAPH-----------R--VPR-------------------------
BOMMO|BGIBMGA00 -----------RNEAAPH-----------R--VPR-------------------------
gi|11907531|dbj ------------------------------AGKGK-------------------------
gi|270008212|gb PKLNA----ISSNSIHSK-----------RE-NRR-------------------------
gi|294610352|db ------------------------------------------------------------
gi|241620045|re ------------------------------SRRRK-------------------------
gi|19171515|emb ------------------------------------------------------------
gi|45544551|dbj ------------------------------------------------------------
gi|193712553|re LTQQQPQQNGGGGGVRGR----------GRRRGGG-------------------------
gi|290753130|db NPSPRGRNSRTHNSAHHRSHSLLQFSATGGNIGGK-------------------------
gi|164521693|gb ------------------------------------------------------------
LATCH|ENSLACP00 ------------------------------------------------------------
DANRE|ENSDARP00 ------------------------------------------------------------
HOMSA|gi|488565 ------------------------------------------------------------
XENTR|ENSXETP00 ------------------------------------------------------------
gi|197320531|gb ------------------------------------------------------------
gi|184186101|re ------------------------------------------------------------
gi|87042260|gb| ------------------------------------------------------------
gi|312376154|gb GGGSIANNNVLSNSIHAR--------GPGHAHQKR-------------------------
gi|3930521|gb|A ------------------------------------------------------------
gi|17226368|gb| -----------------------------RRSIKR-------------------------
gi|195338887|re ----HNRYHFQLNPHNPEHKPPGSKDLVYLEPSPSFCEKNLRQGILGTHGRQCNETSLGV
gi|21711721|gb| ----HNRYHFQLNPHNPEHKPPGSKDLVYLEPSPSFCEKNLRQGILGTHGRQCNETSLGV
gi|194762235|re ----HNRYSFQLNPHNPEHKPPGSKDLVYLEPSPSFCEKNLRHGILGTHGRQCNETSLGV
gi|195147122|re ----HNRYHFQLNPHNPEHKPPGSKDIVYLEPSPSFCEKNLRHGILGTHGRQCNETSLGV
gi|195117368|re ----HNRYHFQLNPHNPEHKPPGPKDIVYLESSPSFCEKNLRQGILGTHGRQCNDTSLGV
gi|195387788|re ----HNRYHFQLNPHNPEHKPPGPKDIVYLEPSPSFCEKNLRQGILGTHGRQCNDTSLGV
gi|195052361|re ----HNRYHFQLNPHNPEHKPPGPKDIVYLEPSPSFCEKNLRQGILGTHGRQCNDTSLGV
gi|60393086|gb| ----NNRYSFQLKPHNPDHKPPGTKDIVYLEPSPSFCEKNLRLGIQGTHGRQCNDTSIGV
gi|74054133|gb| ----NNRYSFQLKPHNPDHKPPGTKDIVYLEPSPSFCEKNLRLGIQGTHGRQCNDTSIGV
gi|253735641|db ----NNRYSFQLKPHNPDHKPPGTKDIVYLEPSPPFCEKNLRLGIQGTHGRQCNDTSIGV
gi|170040118|re ----INRYNFQLKPHNPDHKPPGMKDLVYLEPSPGFCERNPRLGIQGTHGRQCNDTSIGV
gi|157127174|re FPSSINRYNFQLKPHNPDHKPPGTKDLVYLEPSPGFCDRNPRLGIQGTHGRQCNDTSIGV
gi|157013971|gb LC--SRRYNFQLKPYNPEHKPPGSKDLVYLEPSPGFCERNPRLGIQGTHGRQCNDTSIGV
ATTCE|ACEP_0000 ----RQRYNFQLKPYNPEHKPPGQKDLVYVEPSPPFCEKNPKLGILGTHGRQCNDTSIGV
gi|21103973|gb| ----RQRYNFQLKPYNPEHKPPGQKDLVYVEPSPPFCEKNPKLGILGTYGRQCNDTSIGV
gi|21103975|gb| ----RHRYNFQLKPYNPEHKPPGQKDLVYVEPSPPFCEKNPKLGILGTQGRQCNDTSIGV
gi|21103979|gb| ----RHRYNFQLKPYNPEHKPPGQKDLVYVEQSPPFCEKNPKLGILGTHGRQCNDTSIGV
gi|340709126|re ----RHRYNFQLKPYNPEHKPPGPKDLVYLEPSPPFCEKNPKLGILGTHGRQCNDTSIGV
gi|383864839|re ----RHRYNFQLKPYNPEHKPPGPKDLVYLEPSPPFCEKNPKLGILGTHGRQCNDTSIGV
gi|380014047|re ----RHRYNFQLKPYNPEHKPPGPKDLVYLEPSPPFCEKNPKLGILGTHGRQCNDTSIGV
gi|328792342|re ----RHRYNFQLKPYNPEHKPPGPKDLVYLEPSPPFCEKNPKLGILGTHGRQCNDTSIGV
gi|350419248|re ----RHRYNFQLKPYNPEHKPPGPKDLVYLEPSPPFCEKNPKLGILGTHGRQCNDTSIGV
gi|345486197|re ----RHRYNFQLKPYNPEHKPPGVKDLVYLEPSPPFCEKNPKLGILGTHGRQCNDTSIGV
gi|21103977|gb| ----RQRYNFQLKPYNPEHKPPGPKDLVYLEQSPAFCEKNPALGILGTHGRQCNDTSLGV
gi|307188089|gb ----RQRYNLQLKPYNPEHKPPGPKDLVYLEQSPAFCEKNPKLGILGTHGRQCNETSLGV
gi|242007977|re ----RNKYNLQLKPYDPDHKPPGTKDLVYLDPSPDFCERNPKLGIQGTHGRQCNDTSIGV
gi|357615448|gb ----RDRYRFQLRPHNPDHKTPGVKDLVYLESSPGFCEKNPRLGIPGTHGRTCNDTSIGV
gi|389614525|db ----RDRYRFQLRPYNPDHKAPGAKDLVYLESSPGFCEKNPRLGIPGTHGRACNDTSIGV
gi|500860|dbj|B ----KDRYRFQLRPHNPDHKSPGVKDLVYLESSPGFCEKNPRLGIPGTHGRACNDTSIGV
BOMMO|BGIBMGA00 ----KDRYRFQLRPHNPDHKSPGVKDLVYLESSPGFCEKNPRLGIPGTHGRACNDTSIGV
gi|11907531|dbj ----GNRYNFQLQPYDAQHKPPGRKDLVYLDQSPNFCERNPRQGIQGTHGRECNETSLGL
gi|270008212|gb ----KHKYGFQLKPFNPEHKPPGTKDLVYYEMSPGFCEKNPKLGIQGTHGRLCNDTSMGV
gi|294610352|db ----RKKYNYQLKPYNPEHKAPSKKDLVYYENSPNFCEKNLKLGIAGTQGRVCNETSIGV
gi|241620045|re ----GHARSFQLKPLYPDHKPPTRKDLVYFENSPDFCVPNSRLGVQGTRGRHCNESSPGV
gi|19171515|emb -------RRALLKPYHPEHKPPSKKDLVYFENSPDFCYADPSLGHSATLGRTCNVSSLGV
gi|45544551|dbj -------RRALFKPYHPEHKPPSKKDLVYFENSPDFCFPDSNLGHRGTLGRICNASSIGV
gi|193712553|re ----RNRYNFQLKPYDPDLKAPGTKDLVYLETSPGFCDPNPRLGVLGTHGRQCNETSLGL
gi|290753130|db ----SGKYNFQLKPYNPEHKSPSVKDLVYFEPSPSFCDRNPRLGIAGTQGRKCNESSIGV
gi|164521693|gb ------SKAFELEPYNPDHKPPTNKDLVYFENSPDFCEYNPLVGSLGTTGRTCNDTSIGV
LATCH|ENSLACP00 -----RADILHLEPENPAHKPPLPRDLVYFEKSPNFCTYNGKTGTLGTAGRYCNSSSPAL
DANRE|ENSDARP00 ----HRADPRHLEPENPAHKLPSSRDLVYFEKSPNFCSYNGKTGTHGTSGRTCNSSSPAL
HOMSA|gi|488565 -----RAELLRLEPEDPAHKPPSPHDLVYFEKSPNFCTYSGRLGTAGTAGRACNSSSPAL
XENTR|ENSXETP00 ----SRSDPPHLEPENPTHALPSSQDLVYFEKSPNFCSASEKNGTPGTTGRICNSTSLGL
gi|197320531|gb ----RKKRIKHFESADPQHKHPTASDLVYFEESPDFCELNKKVGSLGTRGRQCNNTSIGI
gi|184186101|re ----DRETESSFVPYNPSHKQPASRDLVYFENSPDFCERNDKFGTPGTRGRECNATSLGV
gi|87042260|gb| ----TFTPKFTFTPFDPNHKAPSKKDLVYFEKSPEFCNQNNNIGFKGTVGRECNDTSLGL
gi|312376154|gb ----INRYNFQLKPYNPEHKPPGAKDLVYLEPSPGFCERNPRLGIQGTHGRQCNDTSIGV
gi|3930521|gb|A ------AKVTGLVPKNSRHKFPTDNDLVYHERSPNFCRNNPRLGFEGTRGRECNVTSRGL
gi|17226368|gb| ----KRRKNLDLQPYNPDHKSPSAMDLVYLQESPNFCVRNRTLGIPGTSERECNGTSIGV
: . . * *:** : ** ** . * .* * ** :* .:
gi|195338887|re DGCGLMCCGRGYRRDEVVVVERCACTFHWCCEVKCKLCRTKKVIYTCL
gi|21711721|gb| DGCGLMCCGRGYRRDEVVVVERCACTFHWCCEVKCKLCRTKKVIYTCL
gi|194762235|re DGCGLMCCGRGYRRDEVVVVERCACTFHWCCEVKCKLCRTKKVIYTCL
gi|195147122|re DGCGLMCCGRGYRRDEVIVVERCACTFHWCCEVKCKLCRTKKVIYTCL
gi|195117368|re DGCDLMCCGRGYRTQEVVVVERCACTFHWCCEVKCKLCRTKKIIHTCL
gi|195387788|re DGCDLMCCGRGYRTQEVVVVERCACTFHWCCEVKCKLCRTKKIIHTCL
gi|195052361|re DGCDLMCCGRGYRTQEVVVVERCACTFHWCCEVKCKLCRTKKIIHTCL
gi|60393086|gb| DGCDLMCCGRGYRTQEVVVVERCACTFHWCCEVKCKLCRTKKTIHTCL
gi|74054133|gb| DGCDLMCCGRGYRTQEVVVVERCACTFHWCCEVKCKLCRTKKTIHTCL
gi|253735641|db DGCDLMCCGRGYRTQEVVVVERCACTFHWCCEVKCKLCRTKKTIHTCL
gi|170040118|re DGCDLMCCGRGYRTQEVIVVERCACTFHWCCEVKCKLCRTKKIIHTCL
gi|157127174|re DGCDLMCCGRGYRTQEVIVVERCACTFHWCCEVKCKLCRTKKIIHTCL
gi|157013971|gb DGCDLMCCGRGYRTQEVTVVERCSCTFHWCCEVKCKLCRAKKIIHTCL
ATTCE|ACEP_0000 DGCDLMCCGRGHKTQEVTVIERCSCTFHWCCEVKCQLCRTKKTVHTCL
gi|21103973|gb| DGCDLMCCGRGHKTQEVTVIERCSCT----------------------
gi|21103975|gb| DGCDLMCCGRGHKTQEVTVIERCSCT----------------------
gi|21103979|gb| DGCDLMCCGRGHKTQEVTV-----------------------------
gi|340709126|re DGCDLMCCGRGYKTQEVTVVERCACTFHWCCEVKCQLCRIKKTIHTCL
gi|383864839|re DGCDLMCCGRGYKTQEVTVVERCACTFHWCCEVKCQLCRIKKTIHTCL
gi|380014047|re DGCDLMCCGRGYKTQEVTVVERCACTFHWCCEVKCQLCKIKKTIHTCL
gi|328792342|re DGCDLMCCGRGYKTQEVTVVERCACTFHWCCEVKCQLCKIKKTIHTCL
gi|350419248|re DGCDLMCCGRGYKTQEVTVVERCACTFHWCCEVKCQLCRIKKTIHTCL
gi|345486197|re DGCDLMCCGRGYKTQEIIVVERCNCTFHWCCEVKCQLCRTKKTIHTCL
gi|21103977|gb| DGCDLMCCGRGYKTQEVVVIERCNCI----------------------
gi|307188089|gb DGCDLMCCGRGYKTQEMVVIERCACIFHWCCEVKCQKCRTTKTVHTCL
gi|242007977|re DGCDLMCCGRGHKTQEMMVTERCRCTFHWCCEVKCDYCRTKKTVHTCL
gi|357615448|gb DGCDLMCCGRGYRTETMFVVERCNCTFHWCCDVKCKLCRTEKVVHTCL
gi|389614525|db DGCDLMCCGRGYKTETKFVVERCN------------------------
gi|500860|dbj|B DGCDLMCCGRGYKTNTMFVVERCNCTFHWCCEVKCKLCRTEKVVHTCL
BOMMO|BGIBMGA00 DGCDLMCCGRGYKTNTMFVVERCNCTFHWCCEVKCKLCRTEKVVHTCL
gi|11907531|dbj DGCDLMCCGRGHRSQEVMLVERCHCTFHWCCEVKCKTCHVRKTIHTCQ
gi|270008212|gb DGCDIMCCGRGYRTQEVVVFERCNCTFHWCCEVKCDVCRTKRTIHTCV
gi|294610352|db DGCDLMCCGRGYKTEVKEVVERCACTFHWCCEVKCKVCRTKKTIHTCL
gi|241620045|re DGCESMCCGRGHRTEVREDLERCACTFHWCCQVKCKVCKIRRTVHTCL
gi|19171515|emb DGCDLMCCGRGYKSENREEVSRCNCTFHWCCQVECKTCKTKRLVHECL
gi|45544551|dbj DGCDLMCCGRGHKAEHREETSRCNCTFHWCCQVECRTCKTRRLVHSCL
gi|193712553|re DGCDLMCCGRGHKTHQALVSERCNCTFLWCCEVKCSVCQYRKTVNTCQ
gi|290753130|db DGCDLMCCGRGYKTEEITVRERCECTFHWCCE----------------
gi|164521693|gb DGCDLMCCGRGYKSEEIEEEERCSCTFHWCC-----------------
LATCH|ENSLACP00 DGCELLCCGRGYRTRTEKVTERCNCTFHWCCHVSCLNCTNTQVLHECL
DANRE|ENSDARP00 DGCELLCCGRGYKTRMEQVTERCHCTFHWCCHVSCLNCTSTQTVHQCL
HOMSA|gi|488565 DGCELLCCGRGHRTRTQRVTERCNCTFHWCCHVSCRNCTHTRVLHECL
XENTR|ENSXETP00 DGCELLCCGRGYRSRAEKVTERCHCTFHWCCHVTCLNCTSSQIVHECL
gi|197320531|gb DGCDLLCCERGYRSEIEQVTERCSCTFHWCCQVKCETCVTQRTVHTCL
gi|184186101|re DGCDLMCCSRGSTTTEIKVKERCSCTFHWCCKVKCEECTSFRTVHRCL
gi|87042260|gb| EGCDLMCCGRGHKTQTYMVVERCNCTFRWCCEVMCEACRITKMKHTCL
gi|312376154|gb DGCDLMCCGRGYRTQEVTVVERCACTFHWCCEVKCKLCRTKKTIHTCL
gi|3930521|gb|A DGCDLLCCGRGYATRQEVTKERCNCTFQWCCQVKCEECVRTKTIHTCL
gi|17226368|gb| EGCNLMCCGRGYSSRVVEVVERCSC----------------------I
:** :** **
% mafft --reorder --auto input
References:
Katoh et al. (2002) describes FFT-NS-1, FFT-NS-2 and FFT-NS-i.
Katoh et al. (2005) describes G-INS-i, L-INS-i, E-INS-i and Mafft-homologs.
Katoh and Toh (2008) describes Q-INS-i.
Katoh and Frith (2012) describes *-fragment.
Q-INS-i uses the McCaskill routine from the Vienna RNA package (Hofacker et al. 2003) and MXSCARNA (Tabei et al. 2008).
MAFFT home:
http://mafft.cbrc.jp/alignment/software/