(((((((((((
1_query_sequence_-_Australian_lungfish_HoxA14_
:0.00000,
2_gi_365176835_emb_CBY85303_2__HoxA14_homolog__Neoceratodus_forsteri_
:0.00000):0.08650,
8_gi_328682777_gb_AEB33470_1__homeobox_protein_A14__Protopterus_annectens_
:0.08650):0.11200,(
3_gi_220898177_gb_ACL81433_1__HoxA14__Latimeria_menadoensis_
:0.00000,
4_LATCH_ENSLACP00000019837_pep_novel_scaffold_LatCha1_JH126711_1_2100048_2107529_-1_gene_ENSLACG00000017442_transcript_ENSLACT00000019975_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.00000):0.19850):0.13850,((
5_gi_255742469_gb_ACU32581_1__homeobox_protein_HoxD14__Callorhinchus_milii_
:0.20650,
6_gi_262263016_gb_ACY39976_1__HoxD14__Heterodontus_francisci_
:0.20650):0.01350,
7_gi_301128894_emb_CBL59356_1__HoxD14__Scyliorhinus_canicula_
:0.22000):0.11700):0.04650,((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((
10_gi_327263842_ref_XP_003216726_1__PREDICTED__LOW_QUALITY_PROTEIN__homeobox_protein_Hox-C12-like__Anolis_carolinensis_
:0.00000,
233_gi_28372236_gb_AAO38042_1__HoxC12__Latimeria_menadoensis_
:0.00000):0.00000,
11_gi_220898202_gb_ACL81456_1__HoxC12__Latimeria_menadoensis_
:0.00000):0.00000,
12_LATCH_ENSLACP00000019048_pep_novel_scaffold_LatCha1_JH126829_1_1722264_1724159_-1_gene_ENSLACG00000016761_transcript_ENSLACT00000019181_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.00000):0.00000,
45_gi_363746859_ref_XP_426957_3__PREDICTED__homeobox_protein_Hox-C12__Gallus_gallus_
:0.00000):0.00000,
79_PELSI_ENSPSIP00000005258_pep_novel_scaffold_PelSin_1_0_JH210540_1_454500_456375_-1_gene_ENSPSIG00000004903_transcript_ENSPSIT00000005288_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.00000):0.00000,
968_ANOCA_ENSACAP00000010624_pep_novel_chromosome_AnoCar2_0_2_72133026_72133238_-1_gene_ENSACAG00000010840_transcript_ENSACAT00000010844_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.00000):0.00900,
13_TURTR_ENSTTRP00000004275_pep_novel_scaffold_turTru1_scaffold_105794_313661_315036_-1_gene_ENSTTRG00000004543_transcript_ENSTTRT00000004537_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.00900):0.00000,(
17_HOMSA_ENSP00000243103_pep_known_chromosome_GRCh37_12_54348618_54352740_1_gene_ENSG00000123407_transcript_ENST00000243103_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.00000,
18_HOMSA_gi_27804315_ref_NP_776272_1__homeobox_protein_Hox-C12__Homo_sapiens_
:0.00000):0.00900):0.00000,
19_GORGO_ENSGGOP00000026612_pep_novel_chromosome_gorGor3_1_12_52001222_52002833_1_gene_ENSGGOG00000023684_transcript_ENSGGOT00000022107_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.00900):0.00000,(
20_OTOGA_ENSOGAP00000018648_pep_novel_scaffold_OtoGar3_GL873562_1_8041581_8043173_1_gene_ENSOGAG00000025383_transcript_ENSOGAT00000033778_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.00600,(((
22_PANTR_ENSPTRP00000008555_pep_known_chromosome_CHIMP2_1_4_12_35294938_35296568_-1_gene_ENSPTRG00000005026_transcript_ENSPTRT00000009253_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.00250,(
23_MACMU_ENSMMUP00000006041_pep_known_chromosome_MMUL_1_11_51052937_51054565_1_gene_ENSMMUG00000004541_transcript_ENSMMUT00000006424_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.00000,
24_GORGO_ENSGGOP00000017338_pep_novel_chromosome_gorGor3_1_12_52001222_52002833_1_gene_ENSGGOG00000023684_transcript_ENSGGOT00000030995_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.00000):0.00250):0.00000,
25_CALJA_ENSCJAP00000034933_pep_known_chromosome_C_jacchus3_2_1_9_42874450_42876069_1_gene_ENSCJAG00000018806_transcript_ENSCJAT00000036888_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.00250):0.00300,
36_PONAB_ENSPPYP00000005237_pep_known_chromosome_PPYG2_12_53729442_53731065_1_gene_ENSPPYG00000004589_transcript_ENSPPYT00000005441_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.00550):0.00050):0.00300):0.00000,
21_ORYCU_ENSOCUP00000001005_pep_novel_chromosome_oryCun2_4_37739049_37740591_1_gene_ENSOCUG00000001157_transcript_ENSOCUT00000001157_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.00900):0.00000,
26_NOMLE_ENSNLEP00000021457_pep_novel_supercontig_Nleu1_0_GL397261_1_58515863_58517495_-1_gene_ENSNLEG00000017683_transcript_ENSNLET00000022547_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.00900):0.00000,
27_MICMU_ENSMICP00000010649_pep_novel_genescaffold_micMur1_GeneScaffold_1968_510286_511891_1_gene_ENSMICG00000011709_transcript_ENSMICT00000011699_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.00900):0.00000,
28_BOSTA_ENSBTAP00000001223_pep_known_chromosome_UMD3_1_5_26234886_26236477_-1_gene_ENSBTAG00000000924_transcript_ENSBTAT00000001223_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.00900):0.00000,
29_SUSSC_ENSSSCP00000000297_pep_novel_chromosome_Sscrofa10_2_5_19519313_19520932_-1_gene_ENSSSCG00000000281_transcript_ENSSSCT00000000302_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.00900):0.00000,
30_CAVPO_ENSCPOP00000020832_pep_known_scaffold_cavPor3_scaffold_9_45854322_45855870_-1_gene_ENSCPOG00000026314_transcript_ENSCPOT00000027677_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.00900):0.00000,
31_AILME_ENSAMEP00000000691_pep_novel_scaffold_ailMel1_GL193035_1_293337_294819_1_gene_ENSAMEG00000000665_transcript_ENSAMET00000000715_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.00900):0.00000,
32_EQUCA_ENSECAP00000022437_pep_known_chromosome_EquCab2_6_70819239_70820860_1_gene_ENSECAG00000024893_transcript_ENSECAT00000026847_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.00900):0.00000,
33_LOXAF_ENSLAFP00000026579_pep_novel_supercontig_loxAfr3_scaffold_2_40388131_40389754_1_gene_ENSLAFG00000024750_transcript_ENSLAFT00000027622_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.00900):0.00000,
34_LOXAF_ENSLAFP00000022894_pep_novel_supercontig_loxAfr3_scaffold_2_40388131_40389757_1_gene_ENSLAFG00000024750_transcript_ENSLAFT00000024765_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.00900):0.00000,
35_ICTTR_ENSSTOP00000015013_pep_novel_scaffold_spetri2_JH393322_1_11176743_11178360_1_gene_ENSSTOG00000019478_transcript_ENSSTOT00000020006_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.00900):0.00000,
37_CANFA_ENSCAFP00000009931_pep_novel_chromosome_CanFam3_1_27_1305773_1307350_-1_gene_ENSCAFG00000006645_transcript_ENSCAFT00000010710_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.00900):0.00000,
38_MUSMU_ENSMUSP00000051003_pep_known_chromosome_GRCm38_15_102936757_102938609_1_gene_ENSMUSG00000050328_transcript_ENSMUST00000055562_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.00900):0.00000,
39_PTEVA_ENSPVAP00000011589_pep_novel_genescaffold_pteVam1_GeneScaffold_1618_533420_534991_1_gene_ENSPVAG00000012297_transcript_ENSPVAT00000012296_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.00900):0.00000,
40_RATNO_ENSRNOP00000021580_pep_known_chromosome_RGSC3_4_7_141700558_141702156_1_gene_ENSRNOG00000016116_transcript_ENSRNOT00000021580_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.00900):0.00000,
68_MYOLU_ENSMLUP00000017364_pep_putative_scaffold_Myoluc2_0_GL429927_2406534_2408305_1_gene_ENSMLUG00000026984_transcript_ENSMLUT00000029327_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.00900):0.00000,
84_MYOLU_ENSMLUP00000022488_pep_putative_scaffold_Myoluc2_0_GL429927_2406534_2408305_1_gene_ENSMLUG00000026984_transcript_ENSMLUT00000023519_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.00900):0.00000,
97_gi_24637176_gb_AAN63593_1_AF434200_1_transcription_factor_HoxC12__Pleurodeles_waltl_
:0.00900):0.00000,
102_LOXAF_ENSLAFP00000028706_pep_novel_supercontig_loxAfr3_scaffold_2_40388131_40389757_1_gene_ENSLAFG00000024750_transcript_ENSLAFT00000024462_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.00900):0.00000,
366_ORNAN_ENSOANP00000023761_pep_known_supercontig_OANA5_Contig22807_14595_14831_1_gene_ENSOANG00000015091_transcript_ENSOANT00000023765_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.00900):0.00500,((((
55_gi_123295384_emb_CAM16422_1__novel_protein_similar_to_vertebrate_homeo_box_C12__HOXC12___Danio_rerio_
:0.00000,
56_gi_190339568_gb_AAI62849_1__Homeo_box_C12a__Danio_rerio_
:0.00000):0.00000,
57_gi_190339580_gb_AAI62872_1__Homeo_box_C12a__Danio_rerio_
:0.00000):0.00000,
58_gi_198282043_ref_NP_001104229_1__homeobox_protein_Hox-C12__Danio_rerio_
:0.00000):0.00000,
59_DANRE_ENSDARP00000093921_pep_known_chromosome_Zv9_23_36115143_36116726_1_gene_ENSDARG00000070352_transcript_ENSDART00000103147_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.00000):0.01400):0.00200,(
82_gi_332692518_gb_AEE90194_1__Homeobox_C12b__Anguilla_anguilla_
:0.00000,
83_gi_385654511_gb_AFI62007_1__Hox-C12b__Anguilla_japonica_
:0.00000):0.01600):0.00250,(((((((((((
46_gi_83016970_dbj_BAE53493_1__hoxC12a__Oryzias_latipes_
:0.00000,
47_gi_74267573_dbj_BAE44285_1__hoxC12a__Oryzias_latipes_
:0.00000):0.00000,
48_ORYLA_ENSORLP00000009912_pep_known_chromosome_MEDAKA1_7_12845772_12847612_1_gene_ENSORLG00000007902_transcript_ENSORLT00000009913_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.00000):0.00000,
949_gi_62958693_gb_AAY23663_1__Hox_protein__Oreochromis_niloticus_
:0.00000):0.00000,
51_gi_154183813_gb_ABS70754_1__Hoxc12a__Haplochromis_burtoni_
:0.00000):0.00000,
52_gi_348521430_ref_XP_003448229_1__PREDICTED__homeobox_protein_Hox-C12a-like__Oreochromis_niloticus_
:0.00000):0.00000,
53_ORENI_ENSONIP00000015409_pep_novel_scaffold_Orenil1_0_GL831196_1_1733256_1749680_1_gene_ENSONIG00000012233_transcript_ENSONIT00000015422_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.00000):0.00450,((
72_gi_94482825_gb_ABF22441_1__homeobox_protein_HoxC12a__Takifugu_rubripes_
:0.00000,
73_gi_119370796_sp_Q1KKV3_1_HXCCA_TAKRU_RecName__Full=Homeobox_protein_Hox-C12a
:0.00000):0.00000,
74_TAKRU_ENSTRUP00000010151_pep_known_scaffold_FUGU4_scaffold_66_183466_185171_-1_gene_ENSTRUG00000004280_transcript_ENSTRUT00000010207_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.00000):0.00450):0.00000,
98_TAKRU_ENSTRUP00000010152_pep_known_scaffold_FUGU4_scaffold_66_183466_185171_-1_gene_ENSTRUG00000004280_transcript_ENSTRUT00000010208_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.00450):0.00950,
85_TETNI_ENSTNIP00000004137_pep_novel_chromosome_TETRAODON8_9_4199088_4200906_1_gene_ENSTNIG00000001773_transcript_ENSTNIT00000004271_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.01400):0.00000,
91_gi_47228657_emb_CAG07389_1__unnamed_protein_product__Tetraodon_nigroviridis_
:0.01400):0.00150,((
86_gi_157815970_gb_ABV82004_1__homeobox_protein_HoxC12ba__Salmo_salar_
:0.00000,
87_gi_158702343_gb_ABW77532_1__homeobox_protein_HoxC12ba__Salmo_salar_
:0.00000):0.00000,
88_gi_213514950_ref_NP_001133010_1__homeobox_protein_HoxC12ba__Salmo_salar_
:0.00000):0.01550):0.00300):0.00300,(
61_gi_385654500_gb_AFI61997_1__Hox-C12a__Anguilla_japonica_
:0.00550,
274_gi_332692507_gb_AEE90184_1__Homeobox_C12a__Anguilla_anguilla_
:0.00550):0.01600):0.00200,((
92_gi_157815988_gb_ABV82013_1__homeobox_protein_HoxC12bb__Salmo_salar_
:0.00000,
93_gi_158702354_gb_ABW77542_1__homeobox_protein_HoxC12bb__Salmo_salar_
:0.00000):0.00000,
94_gi_213511178_ref_NP_001133016_1__homeobox_protein_HoxC12bb__Salmo_salar_
:0.00000):0.02350):0.00150,(
62_gi_301614390_ref_XP_002936693_1__PREDICTED__homeobox_protein_Hox-C12-like__Xenopus__Silurana__tropicalis_
:0.00000,
63_XENTR_ENSXETP00000050671_pep_known_scaffold_JGI_4_2_GL172862_1_343006_344323_1_gene_ENSXETG00000023470_transcript_ENSXETT00000050671_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.00000):0.02500):0.00150,((
64_gi_157815932_gb_ABV81985_1__homeobox_protein_HoxC12aa__Salmo_salar_
:0.00000,
65_gi_158702323_gb_ABW77514_1__homeobox_protein_HoxC12aa__Salmo_salar_
:0.00000):0.00000,
66_gi_213514098_ref_NP_001135379_1__homeobox_protein_HoxC12aa__Salmo_salar_
:0.00000):0.02650):0.01700,(
75_gi_157815950_gb_ABV81994_1__homeobox_protein_HoxC12ab__Salmo_salar_
:0.00650,(
77_gi_158702331_gb_ABW77521_1__homeobox_protein_HoxC12ab__Salmo_salar_
:0.00000,
78_gi_213513378_ref_NP_001135091_1__homeobox_protein_HoxC12ab__Salmo_salar_
:0.00000):0.00650):0.03700):0.02400,
388_gi_15029044_emb_CAC44976_1__homeobox_protein_Hox_C12__Xenopus_laevis_
:0.06750):0.00200,
314_gi_256010542_gb_ACU32571_2__homeobox_protein_HoxC12__Callorhinchus_milii_
:0.06950):0.00500,(((
162_gi_4322088_gb_AAD15953_1__homeobox_protein__Danio_rerio_
:0.00000,
163_gi_18858841_ref_NP_571620_1__homeobox_protein_Hox-C12b__Danio_rerio_
:0.00000):0.00000,
164_gi_60392448_sp_Q9YGT0_1_HXCCB_DANRE_RecName__Full=Homeobox_protein_Hox-C12b
:0.00000):0.00400,
172_DANRE_ENSDARP00000067695_pep_known_chromosome_Zv9_11_2178785_2180948_-1_gene_ENSDARG00000046043_transcript_ENSDART00000067696_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.00400):0.07050):0.05700,(
174_gi_154183853_gb_ABS70791_1__HoxD12a__Haplochromis_burtoni_
:0.01850,(
370_gi_348519663_ref_XP_003447349_1__PREDICTED__homeobox_protein_Hox-D12a-like__Oreochromis_niloticus_
:0.00000,
371_ORENI_ENSONIP00000010832_pep_novel_scaffold_Orenil1_0_GL831187_1_838848_841465_-1_gene_ENSONIG00000008617_transcript_ENSONIT00000010841_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.00000):0.01850):0.11300):0.00900,((
700_gi_220898214_gb_ACL81467_1__HoxD12__Latimeria_menadoensis_
:0.00000,
723_LATCH_ENSLACP00000010955_pep_novel_scaffold_LatCha1_JH127184_1_437440_438573_-1_gene_ENSLACG00000009639_transcript_ENSLACT00000011036_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.00000):0.00000,
909_gi_28629683_gb_AAO43047_1__HoxD12__Latimeria_menadoensis_
:0.00000):0.14050):0.00200,((
285_gi_7271824_gb_AAF44636_1_AF224263_6_HoxD12__Heterodontus_francisci_
:0.00000,
286_gi_14916589_sp_Q9IA16_1_HXD12_HETFR_RecName__Full=Homeobox_protein_Hox-D12
:0.00000):0.03650,
436_gi_301128896_emb_CBL59358_1__HoxD12__Scyliorhinus_canicula_
:0.03650):0.10600):0.00850,((
126_gi_74267587_dbj_BAE44292_1__hoxD12a__Oryzias_latipes_
:0.00000,
127_gi_83016975_dbj_BAE53496_1__hoxD12a__Oryzias_latipes_
:0.00000):0.01950,
137_ORYLA_ENSORLP00000021938_pep_novel_chromosome_MEDAKA1_21_24601819_24602905_1_gene_ENSORLG00000017536_transcript_ENSORLT00000021939_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.01950):0.13150):0.00200,(
290_TETNI_ENSTNIP00000004141_pep_known_chromosome_TETRAODON8_2_13444759_13445770_-1_gene_ENSTNIG00000001777_transcript_ENSTNIT00000004275_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.15050,(
380_TAKRU_ENSTRUP00000044945_pep_novel_scaffold_FUGU4_scaffold_100_371712_372790_-1_gene_ENSTRUG00000017534_transcript_ENSTRUT00000045097_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.03150,(
405_gi_94482847_gb_ABF22462_1__homeobox_protein_HoxD12a__Takifugu_rubripes_
:0.00000,
407_gi_119370806_sp_Q1KKT2_1_HXDCA_TAKRU_RecName__Full=Homeobox_protein_Hox-D12a
:0.00000):0.03150):0.11900):0.00250):0.00000,((((((((((((
296_NOMLE_ENSNLEP00000007268_pep_novel_supercontig_Nleu1_0_GL397263_1_19995181_19996139_1_gene_ENSNLEG00000006006_transcript_ENSNLET00000007627_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.01300,(((
315_GORGO_ENSGGOP00000001324_pep_novel_chromosome_gorGor3_1_2b_64017037_64017995_1_gene_ENSGGOG00000001340_transcript_ENSGGOT00000001349_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.00000,
316_GORGO_ENSGGOP00000027400_pep_novel_chromosome_gorGor3_1_2b_64136870_64137828_-1_gene_ENSGGOG00000023318_transcript_ENSGGOT00000023743_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.00000):0.00150,(
317_HOMSA_ENSP00000385586_pep_known_chromosome_GRCh37_2_176964458_176966408_1_gene_ENSG00000170178_transcript_ENST00000406506_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.00000,
318_HOMSA_gi_194353946_ref_NP_067016_3__homeobox_protein_Hox-D12__Homo_sapiens_
:0.00000):0.00150):0.00300,
327_PANTR_ENSPTRP00000060527_pep_known_chromosome_CHIMP2_1_4_2B_180575161_180576119_1_gene_ENSPTRG00000012665_transcript_ENSPTRT00000063945_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.00450):0.00850):0.04550,((
416_PONAB_ENSPPYP00000014469_pep_known_chromosome_PPYG2_2b_66255732_66256690_1_gene_ENSPPYG00000012957_transcript_ENSPPYT00000015056_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.03500,
687_MACMU_ENSMMUP00000030938_pep_known_chromosome_MMUL_1_12_39740821_39741779_1_gene_ENSMMUG00000023501_transcript_ENSMMUT00000033062_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.03500):0.01350,
912_TARSY_ENSTSYP00000003420_pep_novel_scaffold_tarSyr1_scaffold_9668_32532_33471_1_gene_ENSTSYG00000003740_transcript_ENSTSYT00000003732_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.04850):0.01000):0.00250,
442_ICTTR_ENSSTOP00000004407_pep_novel_scaffold_spetri2_JH393319_1_5586772_5587730_1_gene_ENSSTOG00000004918_transcript_ENSSTOT00000004913_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.06100):0.00500,
356_MICMU_ENSMICP00000001987_pep_novel_genescaffold_micMur1_GeneScaffold_2366_670508_671467_1_gene_ENSMICG00000002172_transcript_ENSMICT00000002170_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.06600):0.00550,(((
517_SUSSC_ENSSSCP00000016932_pep_known_chromosome_Sscrofa10_2_15_91368386_91369348_1_gene_ENSSSCG00000015980_transcript_ENSSSCT00000017401_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.04000,
583_BOSTA_ENSBTAP00000005652_pep_known_chromosome_UMD3_1_2_20848044_20849010_-1_gene_ENSBTAG00000004314_transcript_ENSBTAT00000005652_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.04000):0.01250,
570_CANFA_ENSCAFP00000031334_pep_novel_chromosome_CanFam3_1_36_19907442_19908408_1_gene_ENSCAFG00000013429_transcript_ENSCAFT00000021306_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.05250):0.00250,
544_AILME_ENSAMEP00000001956_pep_novel_scaffold_ailMel1_GL193992_1_240409_241369_-1_gene_ENSAMEG00000001858_transcript_ENSAMET00000002035_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.05500):0.01650):0.00600,
528_FELCA_ENSFCAP00000011972_pep_novel_scaffold_CAT_scaffold_161252_133578_134540_1_gene_ENSFCAG00000012910_transcript_ENSFCAT00000012914_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.07750):0.00250,
298_ORYCU_ENSOCUP00000002083_pep_novel_chromosome_oryCun2_7_115660028_115660987_1_gene_ENSOCUG00000002412_transcript_ENSOCUT00000002409_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.08000):0.00600,
973_TURTR_ENSTTRP00000013063_pep_novel_genescaffold_turTru1_GeneScaffold_1722_441956_442918_1_gene_ENSTTRG00000013772_transcript_ENSTTRT00000013771_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.08600):0.00800,
546_TUPBE_ENSTBEP00000009336_pep_novel_genescaffold_TREESHREW_GeneScaffold_4569_75213_76471_1_gene_ENSTBEG00000010799_transcript_ENSTBET00000010795_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.09400):0.00050,
702_LOXAF_ENSLAFP00000014670_pep_novel_supercontig_loxAfr3_scaffold_3_51284496_51285456_-1_gene_ENSLAFG00000017497_transcript_ENSLAFT00000017494_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.09450):0.01450,((
458_RATNO_ENSRNOP00000002154_pep_known_chromosome_RGSC3_4_3_57290419_57291383_1_gene_ENSRNOG00000001587_transcript_ENSRNOT00000002154_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.01250,
950_RATNO_ENSRNOP00000059759_pep_known_chromosome_RGSC3_4_3_57290419_57291383_1_gene_ENSRNOG00000001587_transcript_ENSRNOT00000068636_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.01250):0.01550,
939_MUSMU_ENSMUSP00000001878_pep_known_chromosome_GRCm38_2_74674929_74677706_1_gene_ENSMUSG00000001823_transcript_ENSMUST00000001878_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.02800):0.08100):0.03300,
349_MYOLU_ENSMLUP00000006411_pep_putative_scaffold_Myoluc2_0_GL429772_7113750_7114712_-1_gene_ENSMLUG00000007009_transcript_ENSMLUT00000007015_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.14200):0.01100):0.00000,(
329_gi_385654534_gb_AFI62027_1__Hox-D12b__Anguilla_japonica_
:0.00350,
365_gi_332692537_gb_AEE90211_1__Homeobox_D12b__Anguilla_anguilla_
:0.00350):0.14950):0.00150,((
385_gi_290760381_gb_ADD54557_1__HOXD12__Trachemys_scripta_
:0.08600,(((
437_gi_326922699_ref_XP_003207584_1__PREDICTED__homeobox_protein_Hox-D12-like__Meleagris_gallopavo_
:0.00000,
439_MELGA_ENSMGAP00000009991_pep_novel_chromosome_UMD2_7_16895745_16896897_-1_gene_ENSMGAG00000009673_transcript_ENSMGAT00000010834_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.00000):0.00250,(((
443_gi_312775_emb_CAA43974_1__Ghox_4_7__Gallus_gallus_
:0.00000,
444_gi_45382599_ref_NP_990580_1__homeobox_protein_Hox-D12__Gallus_gallus_
:0.00000):0.00000,
445_gi_400023_sp_P24343_2_HXD12_CHICK_RecName__Full=Homeobox_protein_Hox-D12__AltName__Full=Homeobox_protein_Hox-4_7__Short=Chox-4_7__Short=Ghox-4_7__AltName__Full=Homeobox_protein_Hox-4F__Short=Chox-4F
:0.00000):0.00000,
447_GALGA_ENSGALP00000015070_pep_known_chromosome_WASHUC2_7_17431437_17433113_-1_gene_ENSGALG00000009274_transcript_ENSGALT00000015086_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.00000):0.00250):0.04750,
747_TAEGU_ENSTGUP00000009200_pep_novel_chromosome_taeGut3_2_4_7_17031441_17032219_1_gene_ENSTGUG00000008938_transcript_ENSTGUT00000009299_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.05000):0.03600):0.00000,
471_PELSI_ENSPSIP00000003244_pep_novel_scaffold_PelSin_1_0_JH207676_1_3311162_3312900_-1_gene_ENSPSIG00000003112_transcript_ENSPSIT00000003259_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.08600):0.06850):0.00400,
234_gi_397327513_gb_AFO42775_1__HOXD12__Polyodon_spathula_
:0.15850):0.00000,
874_gi_255742471_gb_ACU32583_1__homeobox_protein_HoxD12__Callorhinchus_milii_
:0.15850):0.00350,((
100_MONDO_ENSMODP00000011939_pep_novel_chromosome_BROADO5_4_187439427_187440517_1_gene_ENSMODG00000009555_transcript_ENSMODT00000012163_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.03600,
101_SARHA_ENSSHAP00000018789_pep_novel_scaffold_DEVIL7_0_GL849635_1_1966314_1967406_1_gene_ENSSHAG00000015948_transcript_ENSSHAT00000018944_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.03600):0.00700,
592_MONDO_ENSMODP00000035420_pep_novel_chromosome_BROADO5_4_187439427_187440517_1_gene_ENSMODG00000009555_transcript_ENSMODT00000037006_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.04300):0.11900):0.00000,((
229_ORNAN_ENSOANP00000007507_pep_known_supercontig_OANA5_Contig13670_9763_11483_1_gene_ENSOANG00000004743_transcript_ENSOANT00000007509_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.01850,
236_ORNAN_ENSOANP00000007509_pep_known_supercontig_OANA5_Contig13670_9763_11486_1_gene_ENSOANG00000004743_transcript_ENSOANT00000007511_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.01850):0.03550,
295_ORNAN_ENSOANP00000007508_pep_known_supercontig_OANA5_Contig13670_9763_11486_1_gene_ENSOANG00000004743_transcript_ENSOANT00000007510_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.05400):0.10800):0.01600,((
14_gi_157816021_gb_ABV82029_1__homeobox_protein_HoxD12ab__Salmo_salar_
:0.00000,
15_gi_158702374_gb_ABW77560_1__homeobox_protein_HoxD12ab__Salmo_salar_
:0.00000):0.00000,
16_gi_213513354_ref_NP_001133028_1__homeobox_protein_HoxD12ab__Salmo_salar_
:0.00000):0.17800):0.00150,((((
41_gi_169154438_emb_CAQ15521_1__homeo_box_D12a__Danio_rerio_
:0.00000,
42_gi_187608365_ref_NP_001119958_1__homeobox_protein_Hox-D12a__Danio_rerio_
:0.00000):0.00000,
43_DANRE_ENSDARP00000076775_pep_known_chromosome_Zv9_9_1973132_1975379_-1_gene_ENSDARG00000059263_transcript_ENSDART00000082339_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.00000):0.01450,(
177_gi_115502402_sp_Q90471_2_HXDCA_DANRE_RecName__Full=Homeobox_protein_Hox-D12a__Short=Hox-D12
:0.00000,
179_DANRE_ENSDARP00000121699_pep_known_chromosome_Zv9_9_1972681_1976813_-1_gene_ENSDARG00000059263_transcript_ENSDART00000142842_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.00000):0.01450):0.06850,
252_gi_974815_emb_CAA61032_1__HoxD12__Danio_rerio_
:0.08300):0.09650):0.00300,
376_GADMO_ENSGMOP00000004568_pep_novel_genescaffold_gadMor1_GeneScaffold_1009_402688_403708_-1_gene_ENSGMOG00000004313_transcript_ENSGMOT00000004706_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.18250):0.00250,(
141_gi_308324290_gb_ADO29280_1__homeobox_protein_hox-d12a__Ictalurus_punctatus_
:0.00000,
142_gi_318037250_ref_NP_001187904_1__homeobox_protein_hox-d12a__Ictalurus_punctatus_
:0.00000):0.18500):0.00650,((
128_gi_157816007_gb_ABV82022_1__homeobox_protein_HoxD12aa__Salmo_salar_
:0.00000,
129_gi_213512446_ref_NP_001133023_1__homeobox_protein_HoxD12aa__Salmo_salar_
:0.00000):0.01150,
841_gi_158702364_gb_ABW77551_1__homeobox_protein_HoxD12aa__Salmo_salar_
:0.01150):0.18000):0.15850,((
44_CIOSA_ENSCSAVP00000014842_pep_novel_reftig_CSAV2_0_reftig_25_1527547_1529443_1_gene_ENSCSAVG00000008685_transcript_ENSCSAVT00000015015_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.33200,((((((
49_gi_255755655_dbj_BAH96553_1__homeodomain_transcription_factor__Balanoglossus_simodensis_
:0.06550,
54_gi_38016611_gb_AAR07639_1__transcription_factor_Hox11/13a__Ptychodera_flava_
:0.06550):0.16200,(
70_gi_116574508_gb_ABK00022_1__hox_11/13a__Saccoglossus_kowalevskii_
:0.00000,
71_gi_259013412_ref_NP_001158413_1__homeobox_11/13a__Saccoglossus_kowalevskii_
:0.00000):0.22750):0.07350,(((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((
50_gi_397327510_gb_AFO42772_1__HOXD11__Polyodon_spathula_
:0.05550,(((((((((((((((((((((((
108_MONDO_ENSMODP00000011952_pep_novel_chromosome_BROADO5_4_187447938_187449662_1_gene_ENSMODG00000009565_transcript_ENSMODT00000012176_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.00900,((((((((((((
158_CAVPO_ENSCPOP00000015198_pep_novel_scaffold_cavPor3_scaffold_3_14202320_14204146_-1_gene_ENSCPOG00000019766_transcript_ENSCPOT00000021661_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.00000,
937_EQUCA_ENSECAP00000002054_pep_known_chromosome_EquCab2_18_54568575_54568919_1_gene_ENSECAG00000003045_transcript_ENSECAT00000002868_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.00000):0.00000,
192_CANFA_ENSCAFP00000019793_pep_novel_chromosome_CanFam3_1_36_19914988_19916766_1_gene_ENSCAFG00000013436_transcript_ENSCAFT00000021317_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.00000):0.00000,
194_HOMSA_ENSP00000249504_pep_known_chromosome_GRCh37_2_176972014_176974722_1_gene_ENSG00000128713_transcript_ENST00000249504_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.00000):0.00000,
195_HOMSA_gi_23510368_ref_NP_067015_2__homeobox_protein_Hox-D11__Homo_sapiens_
:0.00000):0.00000,
201_PANTR_ENSPTRP00000057136_pep_known_chromosome_CHIMP2_1_4_2B_180582709_180585092_1_gene_ENSPTRG00000012666_transcript_ENSPTRT00000065571_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.00000):0.00000,
215_ORYCU_ENSOCUP00000011980_pep_novel_chromosome_oryCun2_7_115667492_115669256_1_gene_ENSOCUG00000013942_transcript_ENSOCUT00000013936_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.00000):0.00000,
238_ORYCU_ENSOCUP00000023411_pep_novel_chromosome_oryCun2_7_115667441_115669259_1_gene_ENSOCUG00000013942_transcript_ENSOCUT00000024965_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.00000):0.00000,
256_PANTR_ENSPTRP00000059068_pep_known_chromosome_CHIMP2_1_4_2B_180582748_180584926_1_gene_ENSPTRG00000012666_transcript_ENSPTRT00000067481_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.00000):0.00000,
451_PONAB_ENSPPYP00000014466_pep_novel_chromosome_PPYG2_2b_66234263_66265342_1_gene_ENSPPYG00000012954_transcript_ENSPPYT00000015053_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.00000):0.00000,
641_NOMLE_ENSNLEP00000007270_pep_novel_supercontig_Nleu1_0_GL397263_1_20005998_20007834_1_gene_ENSNLEG00000006009_transcript_ENSNLET00000007629_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.00000):0.00600,
173_OTOGA_ENSOGAP00000016347_pep_novel_scaffold_OtoGar3_GL873567_1_10251643_10253411_-1_gene_ENSOGAG00000029520_transcript_ENSOGAT00000027188_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.00600):0.00000,
225_MYOLU_ENSMLUP00000006426_pep_putative_scaffold_Myoluc2_0_GL429772_7105422_7107292_-1_gene_ENSMLUG00000007030_transcript_ENSMLUT00000007032_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.00600):0.00300):0.00000,
140_MICMU_ENSMICP00000001998_pep_novel_genescaffold_micMur1_GeneScaffold_2366_677963_679806_1_gene_ENSMICG00000002175_transcript_ENSMICT00000002183_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.00900):0.00000,
165_BOSTA_ENSBTAP00000051665_pep_known_chromosome_UMD3_1_2_20839236_20841537_-1_gene_ENSBTAG00000033330_transcript_ENSBTAT00000054133_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.00900):0.00000,
193_MUSMU_ENSMUSP00000122582_pep_known_chromosome_GRCm38_2_74681999_74684609_1_gene_ENSMUSG00000042499_transcript_ENSMUST00000142312_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.00900):0.00000,
220_AILME_ENSAMEP00000001948_pep_novel_scaffold_ailMel1_GL193992_1_232310_234124_-1_gene_ENSAMEG00000001856_transcript_ENSAMET00000002027_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.00900):0.00000,
284_SARHA_ENSSHAP00000018825_pep_novel_scaffold_DEVIL7_0_GL849635_1_1974619_1975770_1_gene_ENSSHAG00000015976_transcript_ENSSHAT00000018980_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.00900):0.00000,
593_ECHTE_ENSETEP00000008973_pep_novel_genescaffold_TENREC_GeneScaffold_3295_59912_61296_1_gene_ENSETEG00000011066_transcript_ENSETET00000011066_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.00900):0.00600,
159_gi_290760382_gb_ADD54558_1__HOXD11__Trachemys_scripta_
:0.01500):0.00600,
184_gi_290760372_gb_ADD54550_1__HOXD11__Anguis_fragilis_
:0.02100):0.00150,
714_PTEVA_ENSPVAP00000016429_pep_novel_genescaffold_pteVam1_GeneScaffold_1976_177815_179967_1_gene_ENSPVAG00000017417_transcript_ENSPVAT00000017415_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.02250):0.00150,(((((
223_gi_327283063_ref_XP_003226261_1__PREDICTED__homeobox_protein_Hox-D10-like__Anolis_carolinensis_
:0.01450,
942_ANOCA_ENSACAP00000007113_pep_novel_scaffold_AnoCar2_0_GL343356_1_556826_557062_-1_gene_ENSACAG00000007282_transcript_ENSACAT00000007266_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.01450):0.00500,(
263_gi_325260878_gb_ADZ04667_1__homeobox_D11__Notophthalmus_viridescens_
:0.00650,
297_gi_400022_sp_P31263_1_HXD11_NOTVI_RecName__Full=Homeobox_protein_Hox-D11__AltName__Full=NvHox-2
:0.00650):0.01300):0.00300,(((((
239_gi_326922697_ref_XP_003207583_1__PREDICTED__homeobox_protein_Hox-D11-like__Meleagris_gallopavo_
:0.00000,
240_MELGA_ENSMGAP00000009981_pep_novel_chromosome_UMD2_7_16890621_16892180_-1_gene_ENSMGAG00000009660_transcript_ENSMGAT00000010824_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.00000):0.00000,
670_GALGA_ENSGALP00000015069_pep_known_chromosome_WASHUC2_7_17425085_17426017_-1_gene_ENSGALG00000009273_transcript_ENSGALT00000015085_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.00000):0.00000,
244_gi_211937_gb_AAA48822_1__homeodomain-containing_protein__Gallus_gallus_
:0.00000):0.00000,
245_gi_45382913_ref_NP_989951_1__homeobox_protein_Hox-D11__Gallus_gallus_
:0.00000):0.00000,
246_gi_400020_sp_P24342_2_HXD11_CHICK_RecName__Full=Homeobox_protein_Hox-D11__AltName__Full=Homeobox_protein_Hox-4_6__Short=Chox-4_6__Short=Ghox-4_6__AltName__Full=Homeobox_protein_Hox-4E__Short=Chox-4E
:0.00000):0.02250):0.00000,
269_PELSI_ENSPSIP00000003226_pep_novel_scaffold_PelSin_1_0_JH207676_1_3303567_3305157_-1_gene_ENSPSIG00000003098_transcript_ENSPSIT00000003241_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.02250):0.00000,
513_gi_222805_dbj_BAA01133_1__homeodomain_protein__Gallus_gallus_
:0.02250):0.00150):0.00300,
260_gi_310656722_gb_ADP02163_1__Hoxd11__Typhlonectes_natans_
:0.02700):0.00150,
301_gi_290760387_gb_ADD54562_1__HOXD11__Sphenodon_punctatus_
:0.02850):0.00450,
625_gi_3551785_gb_AAC34744_1__homeobox_transcription_factor__Ambystoma_mexicanum_
:0.03300):0.00400,(
241_TAEGU_ENSTGUP00000009203_pep_novel_chromosome_taeGut3_2_4_7_17038300_17039721_1_gene_ENSTGUG00000008941_transcript_ENSTGUT00000009302_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.01550,
276_gi_224055144_ref_XP_002196688_1__PREDICTED__homeobox_D11__Taeniopygia_guttata_
:0.01550):0.02150):0.00350,(((
143_TAKRU_ENSTRUP00000044930_pep_known_scaffold_FUGU4_scaffold_100_366028_367381_-1_gene_ENSTRUG00000017526_transcript_ENSTRUT00000045082_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.01100,(
389_gi_94482848_gb_ABF22463_1__homeobox_protein_HoxD11a__Takifugu_rubripes_
:0.00000,
390_gi_119370804_sp_Q1KKT1_1_HXDBA_TAKRU_RecName__Full=Homeobox_protein_Hox-D11a
:0.00000):0.01100):0.00350,
344_TAKRU_ENSTRUP00000044929_pep_known_scaffold_FUGU4_scaffold_100_366028_367390_-1_gene_ENSTRUG00000017526_transcript_ENSTRUT00000045081_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.01450):0.02150,
242_TAKRU_ENSTRUP00000044927_pep_known_scaffold_FUGU4_scaffold_100_361349_367381_-1_gene_ENSTRUG00000017526_transcript_ENSTRUT00000045079_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.03600):0.00450):0.00100,((
202_gi_154183854_gb_ABS70792_1__Hoxd11a__Haplochromis_burtoni_
:0.01550,
410_ORENI_ENSONIP00000010831_pep_novel_scaffold_Orenil1_0_GL831187_1_831310_835681_-1_gene_ENSONIG00000008616_transcript_ENSONIT00000010840_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.01550):0.02100,((
712_LATCH_ENSLACP00000010850_pep_novel_scaffold_LatCha1_JH127184_1_429699_431170_-1_gene_ENSLACG00000009551_transcript_ENSLACT00000010930_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.00000,
719_gi_220898213_gb_ACL81466_1__HoxD11__Latimeria_menadoensis_
:0.00000):0.00800,
862_gi_28629685_gb_AAO43048_1__HoxD11__Latimeria_menadoensis_
:0.00800):0.02850):0.00500):0.00050,(
224_gi_332692538_gb_AEE90212_1__Homeobox_D11b__Anguilla_anguilla_
:0.00450,
226_gi_385654535_gb_AFI62028_1__Hox-D11b__Anguilla_japonica_
:0.00450):0.03750):0.00250,
450_GASAC_ENSGACP00000006030_pep_novel_group_BROADS1_groupXVI_9822565_9824027_-1_gene_ENSGACG00000004569_transcript_ENSGACT00000006047_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.04450):0.00050,
510_TAKRU_ENSTRUP00000044931_pep_known_scaffold_FUGU4_scaffold_100_366028_367345_-1_gene_ENSTRUG00000017526_transcript_ENSTRUT00000045083_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.04500):0.00250,((
358_gi_157816009_gb_ABV82023_1__homeobox_protein_HoxD11aa__Salmo_salar_
:0.00000,
360_gi_158702365_gb_ABW77552_1__homeobox_protein_HoxD11aa__Salmo_salar_
:0.00000):0.00000,
361_gi_213512638_ref_NP_001133024_1__homeobox_protein_HoxD11aa__Salmo_salar_
:0.00000):0.04750):0.00350,(
673_TETNI_ENSTNIP00000004140_pep_novel_chromosome_TETRAODON8_2_13439364_13440725_-1_gene_ENSTNIG00000001776_transcript_ENSTNIT00000004274_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.03400,
694_TETNI_ENSTNIP00000020078_pep_novel_chromosome_TETRAODON8_2_13439364_13440761_-1_gene_ENSTNIG00000001776_transcript_ENSTNIT00000020309_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.03400):0.01700):0.00150,
590_GADMO_ENSGMOP00000004554_pep_novel_genescaffold_gadMor1_GeneScaffold_1009_394972_397593_-1_gene_ENSGMOG00000004301_transcript_ENSGMOT00000004691_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.05250):0.00300):0.00050,((
624_XENTR_ENSXETP00000058465_pep_known_scaffold_JGI_4_2_GL172799_1_633878_635453_-1_gene_ENSXETG00000032416_transcript_ENSXETT00000060673_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.00850,
638_gi_301612437_ref_XP_002935722_1__PREDICTED__homeobox_protein_Hox-D11-like__Xenopus__Silurana__tropicalis_
:0.00850):0.02750,(
648_gi_92096053_gb_AAI15002_1__MGC131014_protein__Xenopus_laevis_
:0.00000,
651_gi_147904190_ref_NP_001089966_1__homeobox_D11__Xenopus_laevis_
:0.00000):0.03600):0.02000):0.00100,
551_gi_290760360_gb_ADD54541_1__HOXD11__Pantherophis_guttatus_
:0.05700):0.00150,
492_gi_397327519_gb_AFO42780_1__HOXD11__Polyodon_spathula_
:0.05850):0.00200,(
323_gi_255742457_gb_ACU32570_1__homeobox_protein_HoxC11__Callorhinchus_milii_
:0.00000,
511_CALMI_C_milii-RM-TrainedAugustus_20326_AAVX01043355_1_g20326_t1
:0.00000):0.06050):0.00150,(((((
532_gi_169154437_emb_CAQ15520_1__homeo_box_D11a__Danio_rerio_
:0.00000,
534_gi_229577319_ref_NP_571242_1__homeobox_protein_Hox-D11a__Danio_rerio_
:0.00000):0.00000,
535_gi_115502401_sp_Q90470_2_HXDBA_DANRE_RecName__Full=Homeobox_protein_Hox-D11a__Short=Hox-D11__AltName__Full=Homeobox_protein_Hox-C11
:0.00000):0.00000,
537_DANRE_ENSDARP00000076780_pep_known_chromosome_Zv9_9_1966617_1968889_-1_gene_ENSDARG00000059267_transcript_ENSDART00000082344_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.00000):0.00000,
575_gi_89130748_gb_AAI14272_1__Hoxd11a_protein__partial__Danio_rerio_
:0.00000):0.00000,
630_gi_974813_emb_CAA61030_1__HoxD11__Danio_rerio_
:0.00000):0.06200):0.00100,(
99_gi_385654526_gb_AFI62020_1__Hox-D11a__Anguilla_japonica_
:0.00450,
623_gi_332692529_gb_AEE90204_1__Homeobox_D11a__Anguilla_anguilla_
:0.00450):0.05850):0.00400,(
470_gi_327263951_ref_XP_003216780_1__PREDICTED__hypothetical_protein_LOC100552181__Anolis_carolinensis_
:0.00850,
577_ANOCA_ENSACAP00000010636_pep_novel_chromosome_AnoCar2_0_2_72099112_72102084_-1_gene_ENSACAG00000010848_transcript_ENSACAT00000010856_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.00850):0.05850):0.00750,((((
561_gi_157815990_gb_ABV82014_1__homeobox_protein_HoxC11bb__Salmo_salar_
:0.00000,
562_gi_158702344_gb_ABW77533_1__homeobox_protein_HoxC11ba__Salmo_salar_
:0.00000):0.00000,
563_gi_157815972_gb_ABV82005_1__homeobox_protein_HoxC11ba__Salmo_salar_
:0.00000):0.00000,
565_gi_213511378_ref_NP_001133017_1__homeobox_protein_HoxC11bb__Salmo_salar_
:0.00000):0.06150,
608_gi_158702355_gb_ABW77543_1__homeobox_protein_HoxC11bb__Salmo_salar_
:0.06150):0.01300):0.00400,(((
512_TAKRU_ENSTRUP00000039169_pep_known_scaffold_FUGU4_scaffold_48_1078629_1080381_-1_gene_ENSTRUG00000015327_transcript_ENSTRUT00000039310_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.02600,((
533_gi_94482780_gb_ABF22399_1__homeobox_protein_HoxA11b__Takifugu_rubripes_
:0.00000,
536_gi_119370779_sp_Q1KKZ5_1_HXABB_TAKRU_RecName__Full=Homeobox_protein_Hox-A11b
:0.00000):0.02500,
545_TAKRU_ENSTRUP00000039170_pep_known_scaffold_FUGU4_scaffold_48_1078629_1080381_-1_gene_ENSTRUG00000015327_transcript_ENSTRUT00000039311_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.02500):0.00100):0.01400,
584_TAKRU_ENSTRUP00000039167_pep_known_scaffold_FUGU4_scaffold_48_1066189_1080375_-1_gene_ENSTRUG00000015327_transcript_ENSTRUT00000039308_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.04000):0.03300,(
935_gi_47225514_emb_CAG11997_1__unnamed_protein_product__Tetraodon_nigroviridis_
:0.00000,
967_TETNI_ENSTNIP00000003617_pep_known_chromosome_TETRAODON8_8_6789829_6791597_1_gene_ENSTNIG00000000494_transcript_ENSTNIT00000003930_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.00000):0.07300):0.00550):0.00100,(((((((((((((((
247_PONAB_ENSPPYP00000005238_pep_novel_chromosome_PPYG2_12_53747950_53750119_1_gene_ENSPPYG00000004590_transcript_ENSPPYT00000005442_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.00450,(
275_PANTR_ENSPTRP00000008556_pep_known_chromosome_CHIMP2_1_4_12_35274190_35277492_-1_gene_ENSPTRG00000005027_transcript_ENSPTRT00000009254_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.00250,(
287_HOMSA_ENSP00000446680_pep_known_chromosome_GRCh37_12_54366910_54371427_1_gene_ENSG00000123388_transcript_ENST00000546378_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.00000,
288_HOMSA_gi_7657166_ref_NP_055027_1__homeobox_protein_Hox-C11__Homo_sapiens_
:0.00000):0.00250):0.00200):0.00250,
748_MICMU_ENSMICP00000010652_pep_novel_genescaffold_micMur1_GeneScaffold_1968_528653_530832_1_gene_ENSMICG00000011710_transcript_ENSMICT00000011703_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.00700):0.00150,
777_CALJA_ENSCJAP00000034939_pep_known_chromosome_C_jacchus3_2_1_9_42892917_42896224_1_gene_ENSCJAG00000018808_transcript_ENSCJAT00000036895_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.00850):0.00150,((
504_ICTTR_ENSSTOP00000019763_pep_novel_scaffold_spetri2_JH393322_1_11194935_11197220_1_gene_ENSSTOG00000028958_transcript_ENSSTOT00000027675_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.00600,(
783_RATNO_ENSRNOP00000021589_pep_known_chromosome_RGSC3_4_7_141717910_141720096_1_gene_ENSRNOG00000016141_transcript_ENSRNOT00000021589_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.00000,
785_MUSMU_ENSMUSP00000001701_pep_known_chromosome_GRCm38_15_102954427_102957708_1_gene_ENSMUSG00000001656_transcript_ENSMUST00000001701_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.00000):0.00600):0.00200,
505_DIPOR_ENSDORP00000006553_pep_novel_genescaffold_dipOrd1_GeneScaffold_2370_59812_62458_1_gene_ENSDORG00000006990_transcript_ENSDORT00000006990_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.00800):0.00200):0.00050,
459_CAVPO_ENSCPOP00000008475_pep_known_scaffold_cavPor3_scaffold_9_45835708_45837891_-1_gene_ENSCPOG00000009441_transcript_ENSCPOT00000009526_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.01050):0.00100,
729_MACMU_ENSMMUP00000001240_pep_known_chromosome_MMUL_1_11_51071215_51074516_1_gene_ENSMMUG00000000924_transcript_ENSMMUT00000001320_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.01150):0.00150,
829_BOSTA_ENSBTAP00000009028_pep_known_chromosome_UMD3_1_5_26215737_26218209_-1_gene_ENSBTAG00000006879_transcript_ENSBTAT00000009028_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.01300):0.00250,
786_EQUCA_ENSECAP00000022442_pep_known_chromosome_EquCab2_6_70837383_70840203_1_gene_ENSECAG00000024900_transcript_ENSECAT00000026853_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.01550):0.00000,
788_AILME_ENSAMEP00000000697_pep_novel_scaffold_ailMel1_GL193035_1_311252_313250_1_gene_ENSAMEG00000000668_transcript_ENSAMET00000000721_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.01550):0.00150,
805_PTEVA_ENSPVAP00000011590_pep_novel_genescaffold_pteVam1_GeneScaffold_1618_553454_555647_1_gene_ENSPVAG00000012298_transcript_ENSPVAT00000012297_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.01700):0.00700,
873_LOXAF_ENSLAFP00000015195_pep_novel_supercontig_loxAfr3_scaffold_2_40406425_40408574_1_gene_ENSLAFG00000018133_transcript_ENSLAFT00000018132_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.02400):0.00300,
787_CANFA_ENSCAFP00000009922_pep_novel_chromosome_CanFam3_1_27_1287380_1289372_-1_gene_ENSCAFG00000025599_transcript_ENSCAFT00000010701_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.02700):0.00200,
686_MYOLU_ENSMLUP00000000423_pep_putative_scaffold_Myoluc2_0_GL429927_2424666_2427147_1_gene_ENSMLUG00000000470_transcript_ENSMLUT00000000466_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.02900):0.00100,(
774_ORYCU_ENSOCUP00000002809_pep_novel_chromosome_oryCun2_4_37757375_37759724_1_gene_ENSOCUG00000001159_transcript_ENSOCUT00000003235_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.01150,
845_ORYCU_ENSOCUP00000001006_pep_novel_chromosome_oryCun2_4_37757375_37759727_1_gene_ENSOCUG00000001159_transcript_ENSOCUT00000001158_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.01150):0.01850):0.00100,
688_ECHTE_ENSETEP00000013426_pep_novel_scaffold_TENREC_scaffold_314778_57659_59897_1_gene_ENSETEG00000016549_transcript_ENSETET00000016548_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.03100):0.04850):0.00000,((((
377_gi_94482826_gb_ABF22442_1__homeobox_protein_HoxC11a__Takifugu_rubripes_
:0.00000,
379_gi_119370795_sp_Q1KKV2_1_HXCBA_TAKRU_RecName__Full=Homeobox_protein_Hox-C11a
:0.00000):0.00900,
395_TAKRU_ENSTRUP00000009759_pep_known_scaffold_FUGU4_scaffold_66_171694_173892_-1_gene_ENSTRUG00000004120_transcript_ENSTRUT00000009814_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.00900):0.03000,
415_TETNI_ENSTNIP00000004136_pep_novel_chromosome_TETRAODON8_9_4211449_4213611_1_gene_ENSTNIG00000001772_transcript_ENSTNIT00000004270_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.03900):0.03300,((((
600_gi_348521432_ref_XP_003448230_1__PREDICTED__homeobox_protein_Hox-C11a-like_isoform_1__Oreochromis_niloticus_
:0.00000,
602_ORENI_ENSONIP00000015411_pep_novel_scaffold_Orenil1_0_GL831196_1_1746387_1748892_1_gene_ENSONIG00000012235_transcript_ENSONIT00000015424_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.00000):0.00600,
611_gi_154183814_gb_ABS70755_1__Hoxc11a__Haplochromis_burtoni_
:0.00600):0.04600,
684_GASAC_ENSGACP00000012382_pep_novel_group_BROADS1_groupXII_11597219_11599475_1_gene_ENSGACG00000009392_transcript_ENSGACT00000012406_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.05200):0.00200,(
631_ORYLA_ENSORLP00000009920_pep_known_chromosome_MEDAKA1_7_12857047_12859813_1_gene_ENSORLG00000007909_transcript_ENSORLT00000009921_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.03200,(
765_gi_83016969_dbj_BAE53492_1__hoxC11a__Oryzias_latipes_
:0.00000,
766_gi_74267571_dbj_BAE44284_1__hoxC11a__Oryzias_latipes_
:0.00000):0.03200):0.02200):0.01800):0.00750):0.00000,
526_gi_220898175_gb_ACL81431_1__HoxA11__Latimeria_menadoensis_
:0.07950):0.00000,(
558_XENTR_ENSXETP00000050673_pep_known_scaffold_JGI_4_2_GL172862_1_362368_364631_1_gene_ENSXETG00000023471_transcript_ENSXETT00000050673_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.01550,
574_gi_301614392_ref_XP_002936692_1__PREDICTED__homeobox_protein_Hox-C11a-like__Xenopus__Silurana__tropicalis_
:0.01550):0.06400):0.00000,((((
617_gi_61402494_gb_AAH91858_1__Homeo_box_C11a__Danio_rerio_
:0.00000,
618_gi_182889182_gb_AAI64748_1__Hoxc11a_protein__Danio_rerio_
:0.00000):0.00000,
619_gi_82230194_sp_Q58EL0_1_HXCBA_DANRE_RecName__Full=Homeobox_protein_Hox-C11a
:0.00000):0.00000,
620_gi_65301418_ref_NP_571240_1__homeobox_protein_Hox-C11a__Danio_rerio_
:0.00000):0.00000,
621_DANRE_ENSDARP00000093920_pep_known_chromosome_Zv9_23_36126424_36129303_1_gene_ENSDARG00000070351_transcript_ENSDART00000103146_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.00000):0.07950):0.00000,
639_GADMO_ENSGMOP00000019199_pep_novel_genescaffold_gadMor1_GeneScaffold_1797_103671_106392_1_gene_ENSGMOG00000017869_transcript_ENSGMOT00000019663_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.07950):0.00000,(
660_gi_220898201_gb_ACL81455_1__HoxC11__Latimeria_menadoensis_
:0.00000,
662_LATCH_ENSLACP00000019003_pep_novel_scaffold_LatCha1_JH126829_1_1700689_1702658_-1_gene_ENSLACG00000016719_transcript_ENSLACT00000019136_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.00000):0.07950):0.00000,
727_PELSI_ENSPSIP00000005191_pep_novel_scaffold_PelSin_1_0_JH210540_1_434065_438058_-1_gene_ENSPSIG00000004848_transcript_ENSPSIT00000005221_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.07950):0.00000,(
743_gi_118109696_ref_XP_428250_2__PREDICTED__homeobox_protein_Hox-C11a__Gallus_gallus_
:0.00000,
744_GALGA_ENSGALP00000022325_pep_known_chromosome_WASHUC2_Un_random_11038119_11040351_-1_gene_ENSGALG00000014091_transcript_ENSGALT00000022365_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.00000):0.07950):0.00000,
768_gi_325260870_gb_ADZ04660_1__homeobox_C11__Notophthalmus_viridescens_
:0.07950):0.00000,(
870_MACEU_ENSMEUP00000008612_pep_novel_scaffold_Meug_1_0_Scaffold28616_8554_10836_-1_gene_ENSMEUG00000009443_transcript_ENSMEUT00000009465_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.00600,
924_SARHA_ENSSHAP00000007386_pep_novel_scaffold_DEVIL7_0_GL861729_1_228552_233448_1_gene_ENSSHAG00000006420_transcript_ENSSHAT00000007448_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.00600):0.07350):0.00300,
206_gi_255742472_gb_ACU32584_1__homeobox_protein_HoxD11__Callorhinchus_milii_
:0.08250):0.00200,((
495_gi_157815934_gb_ABV81986_1__homeobox_protein_HoxC11aa__Salmo_salar_
:0.00000,
496_gi_158702324_gb_ABW77515_1__homeobox_protein_HoxC11aa__Salmo_salar_
:0.00000):0.00000,
500_gi_213512733_ref_NP_001132997_1__homeobox_protein_HoxC11aa__Salmo_salar_
:0.00000):0.08450):0.00300,(
913_gi_332692508_gb_AEE90185_1__Homeobox_C11a__Anguilla_anguilla_
:0.00000,
914_gi_385654501_gb_AFI61998_1__Hox-C11a__Anguilla_japonica_
:0.00000):0.08750):0.00150,((
253_gi_7271823_gb_AAF44635_1_AF224263_5_HoxD11__Heterodontus_francisci_
:0.00000,
254_gi_14916588_sp_Q9IA15_1_HXD11_HETFR_RecName__Full=Homeobox_protein_Hox-D11
:0.00000):0.07800,
294_gi_301128897_emb_CBL59359_1__HoxD11__Scyliorhinus_canicula_
:0.07800):0.01100):0.00150,(
692_gi_332692519_gb_AEE90195_1__Homeobox_C11b__Anguilla_anguilla_
:0.00000,
693_gi_385654512_gb_AFI62008_1__Hox-C11b__Anguilla_japonica_
:0.00000):0.09050):0.00500,((
412_gi_158702234_gb_ABW77448_1__homeobox_protein_HoxA11ab__Salmo_salar_
:0.01050,(
440_gi_157816055_gb_ABV82046_1__homeobox_protein_HoxA11ab__Salmo_salar_
:0.00000,
441_gi_213515130_ref_NP_001133037_1__homeobox_protein_HoxA11ab__Salmo_salar_
:0.00000):0.01050):0.03300,(
531_gi_158702214_gb_ABW77438_1__homeobox_protein_HoxA11aa__Salmo_salar_
:0.00450,(
573_gi_157816035_gb_ABV82036_1__homeobox_protein_HoxA11aa__Salmo_salar_
:0.00000,
576_gi_213514000_ref_NP_001133032_1__homeobox_protein_HoxA11aa__Salmo_salar_
:0.00000):0.00450):0.03900):0.05200):0.00000,(
464_gi_332692476_gb_AEE90157_1__Homeobox_A11b__Anguilla_anguilla_
:0.00250,
490_gi_385654467_gb_AFI61969_1__Hox-A11b__Anguilla_japonica_
:0.00250):0.09300):0.00000,(
612_gi_255742430_gb_ACU32545_1__homeobox_protein_HoxA11__Callorhinchus_milii_
:0.02350,(
632_gi_254212172_gb_ACT65747_1__Hoxa11__Leucoraja_erinacea_
:0.01950,(
665_gi_22297529_gb_AAM18672_2_AF479755_2_homeobox_A11__Heterodontus_francisci_
:0.00000,
666_gi_301128870_emb_CBL59334_1__HoxA11__Scyliorhinus_canicula_
:0.00000):0.01950):0.00400):0.07200):0.00150,(
527_gi_400180321_gb_AFP73289_1__Hoxa11alpha__Polyodon_spathula_
:0.01500,
554_gi_400180334_gb_AFP73301_1__Hoxa11beta__Polyodon_spathula_
:0.01500):0.08200):0.00150,(
391_gi_158702252_gb_ABW77457_1__homeobox_protein_HoxA11b__Salmo_salar_
:0.00150,(
396_gi_157816073_gb_ABV82055_1__homeobox_protein_HoxA11b__Salmo_salar_
:0.00000,
397_gi_213511828_ref_NP_001135144_1__homeobox_protein_Hox-A11b__Salmo_salar_
:0.00000):0.00150):0.09700):0.00000,((((((((((((
749_ICTTR_ENSSTOP00000015737_pep_novel_scaffold_spetri2_JH393288_1_3810469_3812971_-1_gene_ENSSTOG00000022674_transcript_ENSSTOT00000028863_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.02150,(((
778_BOSTA_ENSBTAP00000019611_pep_known_chromosome_UMD3_1_4_69311987_69314613_1_gene_ENSBTAG00000014738_transcript_ENSBTAT00000019611_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.01400,
789_SUSSC_ENSSSCP00000017688_pep_known_chromosome_Sscrofa10_2_18_50021760_50025397_1_gene_ENSSSCG00000016698_transcript_ENSSSCT00000018179_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.01400):0.00600,(((
828_RATNO_ENSRNOP00000010256_pep_known_chromosome_RGSC3_4_4_80542417_80546079_-1_gene_ENSRNOG00000007627_transcript_ENSRNOT00000010256_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.00600,
872_MUSMU_ENSMUSP00000040920_pep_known_chromosome_GRCm38_6_52242108_52246214_-1_gene_ENSMUSG00000038210_transcript_ENSMUST00000048026_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.00600):0.01350,(((
839_OTOGA_ENSOGAP00000011087_pep_known_scaffold_OtoGar3_GL873547_1_9320162_9322501_-1_gene_ENSOGAG00000012389_transcript_ENSOGAT00000012391_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.01250,(((
854_NOMLE_ENSNLEP00000018229_pep_novel_supercontig_Nleu1_0_GL397330_1_7049103_7052763_-1_gene_ENSNLEG00000014994_transcript_ENSNLET00000019137_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.00950,(
878_PANTR_ENSPTRP00000032504_pep_known_chromosome_CHIMP2_1_4_7_25770013_25774073_-1_gene_ENSPTRG00000019020_transcript_ENSPTRT00000035162_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.00750,(
883_HOMSA_ENSP00000006015_pep_known_chromosome_GRCh37_7_27221134_27224835_-1_gene_ENSG00000005073_transcript_ENST00000006015_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.00000,
884_HOMSA_gi_5031759_ref_NP_005514_1__homeobox_protein_Hox-A11__Homo_sapiens_
:0.00000):0.00750):0.00200):0.00000,(
876_PONAB_ENSPPYP00000019838_pep_known_chromosome_PPYG2_7_57265250_57267598_1_gene_ENSPPYG00000017698_transcript_ENSPPYT00000020621_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.00750,
881_GORGO_ENSGGOP00000028169_pep_novel_chromosome_gorGor3_1_7_27432302_27436355_-1_gene_ENSGGOG00000002226_transcript_ENSGGOT00000033915_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.00750):0.00200):0.00050,
945_TARSY_ENSTSYP00000005712_pep_novel_scaffold_tarSyr1_scaffold_68988_6911_9441_-1_gene_ENSTSYG00000006241_transcript_ENSTSYT00000006241_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.01000):0.00250):0.00050,
895_CHOHO_ENSCHOP00000006566_pep_novel_scaffold_choHof1_scaffold_1425_17652_19990_-1_gene_ENSCHOG00000007426_transcript_ENSCHOT00000007435_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.01300):0.00100,
856_MACMU_ENSMMUP00000017695_pep_known_chromosome_MMUL_1_3_99039905_99043604_1_gene_ENSMMUG00000013462_transcript_ENSMMUT00000018894_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.01400):0.00550):0.00000,
882_FELCA_ENSFCAP00000007362_pep_novel_scaffold_CAT_scaffold_191502_190238_192552_-1_gene_ENSFCAG00000007945_transcript_ENSFCAT00000007948_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.01950):0.00050):0.00100,
893_DIPOR_ENSDORP00000005920_pep_novel_genescaffold_dipOrd1_GeneScaffold_1458_133904_136323_-1_gene_ENSDORG00000006326_transcript_ENSDORT00000006325_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.02100):0.00050):0.00150,(
750_CANFA_ENSCAFP00000004401_pep_novel_chromosome_CanFam3_1_14_40355914_40359991_-1_gene_ENSCAFG00000002966_transcript_ENSCAFT00000004754_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.02150,
784_PTEVA_ENSPVAP00000002363_pep_novel_genescaffold_pteVam1_GeneScaffold_1238_509169_511498_-1_gene_ENSPVAG00000002500_transcript_ENSPVAT00000002500_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.02150):0.00150):0.00050,
849_ORYCU_ENSOCUP00000013031_pep_known_chromosome_oryCun2_10_11900706_11903066_-1_gene_ENSOCUG00000015170_transcript_ENSOCUT00000015161_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.02350):0.00200,
797_ORYCU_ENSOCUP00000020150_pep_novel_chromosome_oryCun2_10_11900706_11903066_-1_gene_ENSOCUG00000015170_transcript_ENSOCUT00000029728_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.02550):0.00200,
918_CALJA_ENSCJAP00000015124_pep_known_chromosome_C_jacchus3_2_1_8_28510578_28514645_1_gene_ENSCJAG00000008187_transcript_ENSCJAT00000015961_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.02750):0.00050,
896_LOXAF_ENSLAFP00000024602_pep_novel_supercontig_loxAfr3_scaffold_5_31284751_31287109_1_gene_ENSLAFG00000005482_transcript_ENSLAFT00000037432_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.02800):0.00550,
857_GORGO_ENSGGOP00000018260_pep_novel_chromosome_gorGor3_1_7_27432302_27436286_-1_gene_ENSGGOG00000002226_transcript_ENSGGOT00000026318_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.03350):0.00750,
936_EQUCA_ENSECAP00000010944_pep_known_chromosome_EquCab2_4_58212537_58214903_-1_gene_ENSECAG00000013229_transcript_ENSECAT00000013760_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.04100):0.00000,
972_LOXAF_ENSLAFP00000027717_pep_novel_supercontig_loxAfr3_scaffold_5_31284751_31287112_1_gene_ENSLAFG00000005482_transcript_ENSLAFT00000026458_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.04100):0.00600,
880_GORGO_ENSGGOP00000002193_pep_novel_chromosome_gorGor3_1_7_27433939_27436326_-1_gene_ENSGGOG00000002226_transcript_ENSGGOT00000002239_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.04700):0.01750,
948_MICMU_ENSMICP00000000455_pep_novel_genescaffold_micMur1_GeneScaffold_568_791041_793438_-1_gene_ENSMICG00000000500_transcript_ENSMICT00000000500_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.06450):0.00100,
800_AILME_ENSAMEP00000006196_pep_novel_scaffold_ailMel1_GL192349_1_2354888_2357160_1_gene_ENSAMEG00000005879_transcript_ENSAMET00000006450_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.06550):0.03300):0.00150,(
80_gi_68437229_ref_XP_699549_1__PREDICTED__homeobox_protein_Hox-C11a_isoform_2__Danio_rerio_
:0.00000,
81_DANRE_ENSDARP00000101188_pep_known_chromosome_Zv9_11_2171560_2173211_-1_gene_ENSDARG00000079406_transcript_ENSDART00000111698_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.00000):0.10000):0.00000,((
591_TETNI_ENSTNIP00000012068_pep_novel_chromosome_TETRAODON8_21_3015983_3017454_1_gene_ENSTNIG00000001767_transcript_ENSTNIT00000012259_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.05450,(((
640_TETNI_ENSTNIP00000004129_pep_novel_chromosome_TETRAODON8_21_3015983_3017454_1_gene_ENSTNIG00000001767_transcript_ENSTNIT00000004263_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.03550,(
699_gi_94482757_gb_ABF22377_1__homeobox_protein_HoxA11a__Takifugu_rubripes_
:0.00000,
701_gi_119370778_sp_Q1KL17_1_HXABA_TAKRU_RecName__Full=Homeobox_protein_Hox-A11a
:0.00000):0.03550):0.01750,
718_TAKRU_ENSTRUP00000040854_pep_known_scaffold_FUGU4_scaffold_12_2365045_2373456_-1_gene_ENSTRUG00000015981_transcript_ENSTRUT00000040996_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.05300):0.00050,
819_gi_47229430_emb_CAF99418_1__unnamed_protein_product__Tetraodon_nigroviridis_
:0.05350):0.00100):0.04000,((
919_gi_154183834_gb_ABS70774_1__Hoxa11a__Haplochromis_burtoni_
:0.01150,(
920_gi_348522811_ref_XP_003448917_1__PREDICTED__homeobox_protein_Hox-A11a-like__Oreochromis_niloticus_
:0.00000,
921_ORENI_ENSONIP00000005792_pep_novel_scaffold_Orenil1_0_GL831202_1_591643_594811_-1_gene_ENSONIG00000004600_transcript_ENSONIT00000005796_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.00000):0.01150):0.05900,((
952_gi_83016925_dbj_BAE53457_1__hoxA11a__Oryzias_latipes_
:0.00000,
953_gi_74267517_dbj_BAE44257_1__hoxA11a__Oryzias_latipes_
:0.00000):0.00000,
958_ORYLA_ENSORLP00000006348_pep_known_chromosome_MEDAKA1_11_10551752_10553422_-1_gene_ENSORLG00000005037_transcript_ENSORLT00000006349_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.00000):0.07050):0.02400):0.00550):0.00000,
795_GADMO_ENSGMOP00000014817_pep_novel_genescaffold_gadMor1_GeneScaffold_1730_92372_94014_-1_gene_ENSGMOG00000013882_transcript_ENSGMOT00000015199_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.10000):0.00350,(((
866_gi_11611813_gb_AAG39067_1__Hoxa-11b__Devario_aequipinnatus_
:0.00000,
868_gi_60392419_sp_Q9DDU2_1_HXABB_DEVAE_RecName__Full=Homeobox_protein_Hox-A11b
:0.00000):0.02600,((((
886_gi_11611815_gb_AAG39068_1__Hoxa-11b__Danio_rerio_
:0.00000,
887_gi_190338177_gb_AAI62917_1__Homeo_box_A11b__Danio_rerio_
:0.00000):0.00000,
888_gi_190338181_gb_AAI62927_1__Homeo_box_A11b__Danio_rerio_
:0.00000):0.00000,
889_gi_18858819_ref_NP_571222_1__homeobox_protein_Hox-A11b__Danio_rerio_
:0.00000):0.00000,
890_gi_60392418_sp_Q9DDU1_1_HXABB_DANRE_RecName__Full=Homeobox_protein_Hox-A11b__Short=Hox-A11
:0.00000):0.02600):0.01550,
934_gi_123204428_gb_ABM73551_1__homeodomain_protein__Megalobrama_amblycephala_
:0.04150):0.06200):0.00000,(
898_gi_154183802_gb_ABS70744_1__Hoxa11b__Haplochromis_burtoni_
:0.00250,(
901_gi_348533878_ref_XP_003454431_1__PREDICTED__homeobox_protein_Hox-A11b-like__Oreochromis_niloticus_
:0.00000,
902_ORENI_ENSONIP00000003712_pep_novel_scaffold_Orenil1_0_GL831286_1_1185365_1189918_1_gene_ENSONIG00000002963_transcript_ENSONIT00000003713_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.00000):0.00250):0.10100):0.00300,((
622_MONDO_ENSMODP00000000537_pep_novel_chromosome_BROADO5_8_297328266_297330940_1_gene_ENSMODG00000000453_transcript_ENSMODT00000000551_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.01900,
685_MONDO_ENSMODP00000032327_pep_novel_chromosome_BROADO5_8_297328263_297330943_1_gene_ENSMODG00000000453_transcript_ENSMODT00000033906_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.01900):0.01400,
772_MACEU_ENSMEUP00000001201_pep_novel_genescaffold_Meug_1_0_GeneScaffold_6117_13003_16310_-1_gene_ENSMEUG00000001311_transcript_ENSMEUT00000001308_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.03300):0.07350):0.00000,
703_MYOLU_ENSMLUP00000007581_pep_putative_scaffold_Myoluc2_0_GL429819_3733480_3735949_1_gene_ENSMLUG00000008300_transcript_ENSMLUT00000008308_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.10650):0.00000,(
809_XENTR_ENSXETP00000001623_pep_known_scaffold_JGI_4_2_GL172692_1_1397328_1399148_1_gene_ENSXETG00000000732_transcript_ENSXETT00000001623_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.01750,
900_gi_301607691_ref_XP_002933440_1__PREDICTED__homeobox_protein_Hox-A10-like__Xenopus__Silurana__tropicalis_
:0.01750):0.08900):0.00000,(
826_PELSI_ENSPSIP00000002843_pep_novel_scaffold_PelSin_1_0_JH224654_1_8732245_8734596_-1_gene_ENSPSIG00000002763_transcript_ENSPSIT00000002854_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.09450,((((((
976_gi_211939_gb_AAA48823_1__homeodomain-containing_protein__Gallus_gallus_
:0.00000,
977_gi_363730042_ref_XP_003640756_1__PREDICTED__homeobox_protein_Hox-A11-like__Gallus_gallus_
:0.00000):0.00000,
978_gi_363730070_ref_XP_003640763_1__PREDICTED__homeobox_protein_Hox-A11-like_isoform_1__Gallus_gallus_
:0.00000):0.00000,
979_gi_399992_sp_P31258_1_HXA11_CHICK_RecName__Full=Homeobox_protein_Hox-A11__AltName__Full=Ghox-1I__AltName__Full=Homeobox_protein_Hox-1_9__Short=Chox-1_9
:0.00000):0.00000,
980_gi_45382911_ref_NP_989950_1__homeobox_protein_Hox-A11__Gallus_gallus_
:0.00000):0.00000,
986_GALGA_ENSGALP00000037025_pep_known_chromosome_WASHUC2_2_32599362_32603906_-1_gene_ENSGALG00000023130_transcript_ENSGALT00000037819_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.00000):0.01000,
985_gi_363730072_ref_XP_003640764_1__PREDICTED__homeobox_protein_Hox-A11-like_isoform_2__Gallus_gallus_
:0.01000):0.08450):0.01200):0.00000,
943_ANOCA_ENSACAP00000010103_pep_novel_scaffold_AnoCar2_0_GL343275_1_1403420_1407205_1_gene_ENSACAG00000010304_transcript_ENSACAT00000010310_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.10650):0.00000,
997_SARHA_ENSSHAP00000019577_pep_novel_scaffold_DEVIL7_0_GL861706_1_2255925_2258327_1_gene_ENSSHAG00000016623_transcript_ENSSHAT00000019734_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.10650):0.00150,
603_GASAC_ENSGACP00000010970_pep_novel_group_BROADS1_groupXX_9716854_9718596_1_gene_ENSGACG00000008297_transcript_ENSGACT00000010993_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.10800):0.00350,
969_GASAC_ENSGACP00000009442_pep_novel_group_BROADS1_groupX_9914069_9915690_-1_gene_ENSGACG00000007132_transcript_ENSGACT00000009462_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.11150):0.00950,(
148_gi_385654453_gb_AFI61957_1__Hox-A11a__Anguilla_japonica_
:0.01300,
355_gi_332692467_gb_AEE90149_1__Homeobox_A11a__Anguilla_anguilla_
:0.01300):0.10800):0.01350,((
571_gi_83016937_dbj_BAE53467_1__hoxA11b__Oryzias_latipes_
:0.00000,
572_gi_74267527_dbj_BAE44262_1__hoxA11b__Oryzias_latipes_
:0.00000):0.00000,
607_ORYLA_ENSORLP00000009534_pep_known_chromosome_MEDAKA1_16_13120119_13121655_1_gene_ENSORLG00000007608_transcript_ENSORLT00000009535_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.00000):0.13450):0.08500,(((((((((((((
111_gi_172087274_ref_XP_001913179_1__Hox10__Oikopleura_dioica_
:0.00000,
112_gi_48994287_gb_AAT47861_1__Hox10__Oikopleura_dioica_
:0.00000):0.00000,
113_gi_313230051_emb_CBY07755_1__unnamed_protein_product__Oikopleura_dioica_
:0.00000):0.00000,
114_gi_313245905_emb_CBY34887_1__unnamed_protein_product__Oikopleura_dioica_
:0.00000):0.00000,
115_OIKDI_GSOIDT00003106001
:0.00000):0.00000,
790_gi_34304661_gb_AAQ63436_1__Hox10__Oikopleura_dioica_
:0.00000):0.05400,((
337_gi_70569887_dbj_BAE06496_1__transcription_factor_protein__Ciona_intestinalis_
:0.00650,
341_CIOIN_ENSCINP00000001927_pep_known_scaffold_KH_HT000052_1_98523_102849_-1_gene_ENSCING00000001031_transcript_ENSCINT00000001927_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.00650):0.01000,(
353_gi_27525477_emb_CAD59671_1__putative_homeobox_protein_Hox10__Ciona_intestinalis_
:0.00000,
354_gi_74096477_ref_NP_001027696_1__hox10_protein__Ciona_intestinalis_
:0.00000):0.01650):0.03750):0.00000,(
560_CIOSA_ENSCSAVP00000005910_pep_novel_reftig_CSAV2_0_reftig_696_13762_21737_-1_gene_ENSCSAVG00000003530_transcript_ENSCSAVT00000005985_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.01750,
642_CIOSA_ENSCSAVP00000005911_pep_novel_reftig_CSAV2_0_reftig_696_13762_21707_-1_gene_ENSCSAVG00000003530_transcript_ENSCSAVT00000005986_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.01750):0.03650):0.03950,
721_gi_452480_gb_AAA16226_1__homeobox_protein__partial__Styela_clava_
:0.09350):0.00000,
818_gi_454798_gb_AAA16288_1__homeobox_protein__partial__Styela_plicata_
:0.09350):0.11200,((
689_gi_157815954_gb_ABV81996_1__homeobox_protein_HoxC10ab__Salmo_salar_
:0.00000,
690_gi_158702333_gb_ABW77523_1__homeobox_protein_HoxC10ab__Salmo_salar_
:0.00000):0.00000,
691_gi_213513926_ref_NP_001133004_1__homeobox_protein_HoxC10ab__Salmo_salar_
:0.00000):0.20550):0.00200,(
855_gi_255742473_gb_ACU32585_1__homeobox_protein_HoxD10__Callorhinchus_milii_
:0.17300,(
928_gi_7271822_gb_AAF44634_1_AF224263_4_HoxD10__Heterodontus_francisci_
:0.00000,
930_gi_14916587_sp_Q9IA14_1_HXD10_HETFR_RecName__Full=Homeobox_protein_Hox-D10
:0.00000):0.17300):0.03450):0.00400,
717_gi_332692520_gb_AEE90196_1__Homeobox_C10b__Anguilla_anguilla_
:0.21150):0.00000,
927_GADMO_ENSGMOP00000019207_pep_novel_genescaffold_gadMor1_GeneScaffold_1797_113062_118465_1_gene_ENSGMOG00000017875_transcript_ENSGMOT00000019671_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.21150):0.00800):0.01400,((((((((((((((
105_gi_74267591_dbj_BAE44294_1__hoxD9b__Oryzias_latipes_
:0.00000,
106_gi_83016985_dbj_BAE53502_1__hoxD9b__Oryzias_latipes_
:0.00000):0.01650,
426_ORYLA_ENSORLP00000001666_pep_known_chromosome_MEDAKA1_15_4374365_4380128_-1_gene_ENSORLG00000001349_transcript_ENSORLT00000001667_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.01650):0.01450,((((((
166_TAKRU_ENSTRUP00000024023_pep_known_scaffold_FUGU4_scaffold_39_583315_584944_1_gene_ENSTRUG00000009562_transcript_ENSTRUT00000024122_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.00000,
406_gi_61200953_gb_AAX39848_1__HoxD9b__partial__Takifugu_rubripes_
:0.00000):0.00000,
167_gi_94482863_gb_ABF22477_1__homeobox_protein_HoxD9b__Takifugu_rubripes_
:0.00000):0.00000,
168_gi_119370802_sp_Q1KKR7_1_HXD9B_TAKRU_RecName__Full=Homeobox_protein_Hox-D9b
:0.00000):0.00000,
212_TAKRU_ENSTRUP00000024024_pep_known_scaffold_FUGU4_scaffold_39_583339_584944_1_gene_ENSTRUG00000009562_transcript_ENSTRUT00000024123_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.00000):0.00650,
249_TETNI_ENSTNIP00000004143_pep_novel_chromosome_TETRAODON8_17_9699262_9700856_1_gene_ENSTNIG00000001779_transcript_ENSTNIT00000004277_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.00650):0.01800,
646_TAKRU_ENSTRUP00000024025_pep_known_scaffold_FUGU4_scaffold_39_584465_584926_1_gene_ENSTRUG00000009562_transcript_ENSTRUT00000024124_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.02450):0.00650):0.00000,((
182_gi_348501466_ref_XP_003438290_1__PREDICTED__homeobox_protein_Hox-D9b-like__Oreochromis_niloticus_
:0.02750,(
183_ORENI_ENSONIP00000001695_pep_novel_scaffold_Orenil1_0_GL831135_1_8150585_8154870_-1_gene_ENSONIG00000001343_transcript_ENSONIT00000001694_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.01300,
227_ORENI_ENSONIP00000001696_pep_novel_scaffold_Orenil1_0_GL831135_1_8150585_8154870_-1_gene_ENSONIG00000001343_transcript_ENSONIT00000001695_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.01300):0.01450):0.00000,
211_gi_154183861_gb_ABS70798_1__Hoxd9b__Haplochromis_burtoni_
:0.02750):0.00350):0.02100,
131_GASAC_ENSGACP00000015743_pep_novel_group_BROADS1_groupVI_16160314_16162603_1_gene_ENSGACG00000011902_transcript_ENSGACT00000015774_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.05200):0.01800,
381_GADMO_ENSGMOP00000004128_pep_novel_genescaffold_gadMor1_GeneScaffold_2339_2973_5476_1_gene_ENSGMOG00000003887_transcript_ENSGMOT00000004255_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.07000):0.09000,((((((((((((((((((((((((((((((((((((((((((((((((((
124_gi_332692495_gb_AEE90174_1__Homeobox_B9b__Anguilla_anguilla_
:0.00850,
966_gi_385654488_gb_AFI61987_1__Hox-B9b__partial__Anguilla_japonica_
:0.00850):0.05600,((
160_gi_158702264_gb_ABW77463_1__homeobox_protein_HoxB9aa__Salmo_salar_
:0.01300,((
175_gi_157816101_gb_ABV82069_1__homeobox_protein_HoxB9ab__Salmo_salar_
:0.00000,
176_gi_158702276_gb_ABW77474_1__homeobox_protein_HoxB9ab__Salmo_salar_
:0.00000):0.00000,
178_gi_213514632_ref_NP_001135098_1__homeobox_protein_HoxB9ab__Salmo_salar_
:0.00000):0.01300):0.04250,(((
320_DANRE_ENSDARP00000007852_pep_known_chromosome_Zv9_3_23968742_23973665_1_gene_ENSDARG00000056023_transcript_ENSDART00000006479_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.01800,(
338_gi_4322080_gb_AAD15949_1__homeobox_protein__Danio_rerio_
:0.00000,
339_gi_56790313_ref_NP_571196_1__homeobox_protein_Hox-B9a__Danio_rerio_
:0.00000):0.01800):0.01350,((
346_gi_110825727_sp_Q9PWM2_2_HXB9A_DANRE_RecName__Full=Homeobox_protein_Hox-B9a__Short=Hox-B9
:0.00000,
347_DANRE_ENSDARP00000022169_pep_known_chromosome_Zv9_3_23968592_23973677_1_gene_ENSDARG00000056023_transcript_ENSDART00000023674_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.00000):0.00250,
368_gi_66911681_gb_AAH96950_1__Hoxb9a_protein__Danio_rerio_
:0.00250):0.02900):0.01150,
992_gi_123204485_gb_ABM73566_1__homeodomain_protein__Megalobrama_amblycephala_
:0.04300):0.01250):0.00900):0.00250,(
668_gi_332692485_gb_AEE90165_1__Homeobox_B9a__Anguilla_anguilla_
:0.00000,
669_gi_385654476_gb_AFI61977_1__Hox-B9a__Anguilla_japonica_
:0.00000):0.06700):0.01000,(
302_TETNI_ENSTNIP00000004127_pep_novel_chromosome_TETRAODON8_Un_random_5560244_5566775_-1_gene_ENSTNIG00000010822_transcript_ENSTNIT00000004261_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.06750,(
480_gi_94482794_gb_ABF22412_1__homeobox_protein_HoxB9a__Takifugu_rubripes_
:0.00000,
482_gi_119370790_sp_Q1KKY2_1_HXB9A_TAKRU_RecName__Full=Homeobox_protein_Hox-B9a
:0.00000):0.06750):0.00950):0.00000,
326_TETNI_ENSTNIP00000013750_pep_novel_chromosome_TETRAODON8_Un_random_5560244_5566775_-1_gene_ENSTNIG00000010822_transcript_ENSTNIT00000013944_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.07700):0.00000,
332_TAKRU_ENSTRUP00000023836_pep_known_scaffold_FUGU4_scaffold_41_534334_541200_1_gene_ENSTRUG00000009487_transcript_ENSTRUT00000023934_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.07700):0.00000,
343_TAKRU_ENSTRUP00000023835_pep_known_scaffold_FUGU4_scaffold_41_534334_541200_1_gene_ENSTRUG00000009487_transcript_ENSTRUT00000023933_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.07700):0.00000,
404_TAKRU_ENSTRUP00000023832_pep_known_scaffold_FUGU4_scaffold_41_534334_541200_1_gene_ENSTRUG00000009487_transcript_ENSTRUT00000023930_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.07700):0.00000,
488_TAKRU_ENSTRUP00000023834_pep_known_scaffold_FUGU4_scaffold_41_534334_541200_1_gene_ENSTRUG00000009487_transcript_ENSTRUT00000023932_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.07700):0.00000,
674_TAKRU_ENSTRUP00000023833_pep_known_scaffold_FUGU4_scaffold_41_534334_541200_1_gene_ENSTRUG00000009487_transcript_ENSTRUT00000023931_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.07700):0.00500,
971_OTOGA_ENSOGAP00000007769_pep_novel_scaffold_OtoGar3_GL873537_1_26810296_26813661_-1_gene_ENSOGAG00000008668_transcript_ENSOGAT00000008669_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.08200):0.00250,(
587_gi_154183795_gb_ABS70738_1__Hoxb9a__Haplochromis_burtoni_
:0.01350,(
609_gi_348517811_ref_XP_003446426_1__PREDICTED__homeobox_protein_Hox-B9a-like__Oreochromis_niloticus_
:0.00000,
610_ORENI_ENSONIP00000007786_pep_novel_scaffold_Orenil1_0_GL831179_1_110809_119779_1_gene_ENSONIG00000006179_transcript_ENSONIT00000007791_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.00000):0.01350):0.07100):0.00000,(
697_XENTR_ENSXETP00000057085_pep_known_scaffold_JGI_4_2_GL172970_1_578562_589462_-1_gene_ENSXETG00000027350_transcript_ENSXETT00000057085_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.01400,((
802_gi_89269520_emb_CAJ82382_1__homeo_box_B9__Xenopus__Silurana__tropicalis_
:0.00000,
803_gi_37590431_gb_AAH59757_1__homeobox_B9__Xenopus__Silurana__tropicalis_
:0.00000):0.00000,
804_gi_45360913_ref_NP_988879_1__homeobox_B9__Xenopus__Silurana__tropicalis_
:0.00000):0.01400):0.07050):0.00000,
781_XENTR_ENSXETP00000025572_pep_known_scaffold_JGI_4_2_GL172970_1_578562_589462_-1_gene_ENSXETG00000027350_transcript_ENSXETT00000025572_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.08450):0.00300,(((
614_gi_327275822_ref_XP_003222671_1__PREDICTED__homeobox_protein_Hox-B9-like__Anolis_carolinensis_
:0.00000,
615_ANOCA_ENSACAP00000006259_pep_novel_chromosome_AnoCar2_0_6_75640473_75645469_-1_gene_ENSACAG00000006412_transcript_ENSACAT00000006398_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.00000):0.07700,
791_gi_37528841_gb_AAQ92346_1__transcription_factor_HoxB9__partial__Pleurodeles_waltl_
:0.07700):0.00300,(
770_PELSI_ENSPSIP00000007731_pep_novel_scaffold_PelSin_1_0_JH208036_1_1163307_1166962_1_gene_ENSPSIG00000007113_transcript_ENSPSIT00000007772_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.06050,
792_GALGA_ENSGALP00000001945_pep_known_chromosome_WASHUC2_27_3563906_3569245_1_gene_ENSGALG00000001276_transcript_ENSGALT00000001947_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.06050):0.01950):0.00750):0.00450,(
601_gi_400004_sp_P31272_1_HXB9_XENLA_RecName__Full=Homeobox_protein_Hox-B9__AltName__Full=XlHbox-6
:0.01500,(
910_gi_76779965_gb_AAI06422_1__Unknown__protein_for_MGC_131095___Xenopus_laevis_
:0.00000,
911_gi_291290915_ref_NP_001167488_1__homeobox_B9__Xenopus_laevis_
:0.00000):0.01500):0.07700):0.00150,(
507_gi_220898197_gb_ACL81452_1__HoxB9__Latimeria_menadoensis_
:0.00000,
509_LATCH_ENSLACP00000017173_pep_novel_scaffold_LatCha1_JH126617_1_1180186_1186628_-1_gene_ENSLACG00000015129_transcript_ENSLACT00000017299_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.00000):0.09350):0.00000,
961_ORYCU_ENSOCUP00000016016_pep_novel_chromosome_oryCun2_19_38737505_38740733_1_gene_ENSOCUG00000027316_transcript_ENSOCUT00000029474_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.09350):0.00300,(((
925_gi_7271835_gb_AAF44646_1_AF224262_8_HoxA9__Heterodontus_francisci_
:0.00000,
926_gi_14916598_sp_Q9IA26_1_HXA9_HETFR_RecName__Full=Homeobox_protein_Hox-A9
:0.00000):0.03600,
955_gi_301128872_emb_CBL59336_1__HoxA9__Scyliorhinus_canicula_
:0.03600):0.01300,
984_gi_254212174_gb_ACT65749_1__Hoxa9__Leucoraja_erinacea_
:0.04900):0.04750):0.00200,((
520_gi_83016951_dbj_BAE53478_1__hoxB9a__Oryzias_latipes_
:0.00000,
521_gi_74267545_dbj_BAE44271_1__hoxB9a__Oryzias_latipes_
:0.00000):0.00000,
522_ORYLA_ENSORLP00000021315_pep_known_chromosome_MEDAKA1_8_24308256_24318774_1_gene_ENSORLG00000017035_transcript_ENSORLT00000021316_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.00000):0.09850):0.01500,
653_ORNAN_ENSOANP00000013736_pep_known_ultracontig_OANA5_Ultra514_14665871_14674260_1_gene_ENSOANG00000008615_transcript_ENSOANT00000013739_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.11350):0.00150,(
626_gi_220898184_gb_ACL81440_1__HoxA9__Latimeria_menadoensis_
:0.00000,
627_LATCH_ENSLACP00000019754_pep_novel_scaffold_LatCha1_JH126711_1_2054742_2056323_-1_gene_ENSLACG00000017369_transcript_ENSLACT00000019892_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.00000):0.11500):0.00000,
663_LOXAF_ENSLAFP00000024719_pep_novel_supercontig_loxAfr3_scaffold_5_31304543_31306430_1_gene_ENSLAFG00000008970_transcript_ENSLAFT00000036964_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.11500):0.00000,((((((((((
705_LOXAF_ENSLAFP00000007527_pep_novel_supercontig_loxAfr3_scaffold_5_31304543_31306430_1_gene_ENSLAFG00000008970_transcript_ENSLAFT00000008969_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.00750,(
832_RATNO_ENSRNOP00000009487_pep_known_chromosome_RGSC3_4_4_80524247_80526250_-1_gene_ENSRNOG00000006906_transcript_ENSRNOT00000009487_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.00700,
840_MUSMU_ENSMUSP00000046939_pep_known_chromosome_GRCm38_6_52223100_52227370_-1_gene_ENSMUSG00000038227_transcript_ENSMUST00000048680_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.00700):0.00050):0.00700,(
708_MICMU_ENSMICP00000000450_pep_novel_genescaffold_micMur1_GeneScaffold_568_767066_768937_-1_gene_ENSMICG00000000497_transcript_ENSMICT00000000495_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.01250,((((((((
775_SUSSC_ENSSSCP00000017690_pep_novel_chromosome_Sscrofa10_2_18_50041645_50043875_1_gene_ENSSSCG00000016700_transcript_ENSSSCT00000018181_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.00000,
776_SUSSC_ENSSSCP00000021454_pep_novel_chromosome_Sscrofa10_2_18_49840681_49842577_1_gene_ENSSSCG00000028997_transcript_ENSSSCT00000029161_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.00000):0.00500,(
806_FELCA_ENSFCAP00000007359_pep_novel_scaffold_CAT_scaffold_191502_166306_168384_-1_gene_ENSFCAG00000007944_transcript_ENSFCAT00000007945_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.00000,
807_CANFA_ENSCAFP00000004393_pep_novel_chromosome_CanFam3_1_14_40337999_40339923_-1_gene_ENSCAFG00000002961_transcript_ENSCAFT00000004746_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.00000):0.00500):0.00150,
834_AILME_ENSAMEP00000006204_pep_novel_scaffold_ailMel1_GL192349_1_2374513_2376398_1_gene_ENSAMEG00000005885_transcript_ENSAMET00000006458_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.00650):0.00100,(((
816_MACMU_ENSMMUP00000017692_pep_known_chromosome_MMUL_1_3_99059931_99063012_1_gene_ENSMMUG00000013459_transcript_ENSMMUT00000018891_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.00450,
877_PONAB_ENSPPYP00000019840_pep_known_chromosome_PPYG2_7_57285200_57287053_1_gene_ENSPPYG00000017700_transcript_ENSPPYT00000020623_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.00450):0.00050,(
833_PANTR_ENSPTRP00000048101_pep_known_chromosome_CHIMP2_1_4_7_25751279_25754375_-1_gene_ENSPTRG00000019018_transcript_ENSPTRT00000055571_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.00450,(
851_HOMSA_ENSP00000343619_pep_known_chromosome_GRCh37_7_27202054_27205149_-1_gene_ENSG00000078399_transcript_ENST00000343483_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.00000,
852_HOMSA_gi_23097236_ref_NP_689952_1__homeobox_protein_Hox-A9__Homo_sapiens_
:0.00000):0.00450):0.00050):0.00000,
904_GORGO_ENSGGOP00000002189_pep_novel_chromosome_gorGor3_1_7_27413561_27416656_-1_gene_ENSGGOG00000002222_transcript_ENSGGOT00000002235_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.00500):0.00250):0.00250,
831_SORAR_ENSSARP00000005026_pep_novel_genescaffold_COMMON_SHREW1_GeneScaffold_1493_127922_130320_-1_gene_ENSSARG00000005576_transcript_ENSSART00000005550_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.01000):0.00100,
782_TUPBE_ENSTBEP00000009507_pep_novel_scaffold_TREESHREW_scaffold_121135_80437_82314_-1_gene_ENSTBEG00000011012_transcript_ENSTBET00000010993_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.01100):0.00000,
801_EQUCA_ENSECAP00000006424_pep_known_chromosome_EquCab2_4_58193228_58195216_-1_gene_ENSECAG00000008431_transcript_ENSECAT00000008560_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.01100):0.00000,
871_NOMLE_ENSNLEP00000018226_pep_novel_supercontig_Nleu1_0_GL397330_1_7030215_7033300_-1_gene_ENSNLEG00000014992_transcript_ENSNLET00000019133_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.01100):0.00150):0.00200):0.00050,
853_OTOGA_ENSOGAP00000013426_pep_known_scaffold_OtoGar3_GL873547_1_9301032_9302931_-1_gene_ENSOGAG00000015000_transcript_ENSOGAT00000015002_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.01500):0.00750,
793_PTEVA_ENSPVAP00000002359_pep_novel_genescaffold_pteVam1_GeneScaffold_1238_489770_491656_-1_gene_ENSPVAG00000002497_transcript_ENSPVAT00000002496_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.02250):0.00050,
720_CAVPO_ENSCPOP00000010215_pep_known_scaffold_cavPor3_scaffold_44_3901634_3903476_-1_gene_ENSCPOG00000011365_transcript_ENSCPOT00000011471_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.02300):0.00350,
764_ICTTR_ENSSTOP00000018744_pep_novel_scaffold_spetri2_JH393288_1_3770241_3793768_-1_gene_ENSSTOG00000028613_transcript_ENSSTOT00000028030_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.02650):0.00450,
894_DIPOR_ENSDORP00000005917_pep_novel_genescaffold_dipOrd1_GeneScaffold_1458_114204_116299_-1_gene_ENSDORG00000006323_transcript_ENSDORT00000006322_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.03100):0.01100,(
798_ORYCU_ENSOCUP00000025306_pep_novel_chromosome_oryCun2_10_11882131_11883940_-1_gene_ENSOCUG00000020585_transcript_ENSOCUT00000028906_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.02900,
850_ORYCU_ENSOCUP00000019782_pep_known_chromosome_oryCun2_10_11882131_11883940_-1_gene_ENSOCUG00000020585_transcript_ENSOCUT00000026926_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.02900):0.01300):0.05450,(
951_MACMU_ENSMMUP00000017693_pep_known_chromosome_MMUL_1_3_99059984_99061850_1_gene_ENSMMUG00000013459_transcript_ENSMMUT00000018892_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.01000,
970_PANTR_ENSPTRP00000032502_pep_known_chromosome_CHIMP2_1_4_7_25751279_25754297_-1_gene_ENSPTRG00000019018_transcript_ENSPTRT00000035160_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.01000):0.08650):0.00900,
917_ERIEU_ENSEEUP00000008990_pep_novel_scaffold_HEDGEHOG_scaffold_374504_51257_53364_1_gene_ENSEEUG00000009872_transcript_ENSEEUT00000009866_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.10550):0.00950):0.00000,
728_OCHPR_ENSOPRP00000009549_pep_novel_genescaffold_pika_GeneScaffold_1021_130736_132704_-1_gene_ENSOPRG00000010452_transcript_ENSOPRT00000010450_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.11500):0.00000,
751_CALJA_ENSCJAP00000015011_pep_known_chromosome_C_jacchus3_2_1_8_28530432_28533130_1_gene_ENSCJAG00000008096_transcript_ENSCJAT00000015840_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.11500):0.00000,((
767_gi_122936364_gb_AAI30087_1__LOC100037070_protein__Xenopus_laevis_
:0.00000,
769_gi_148234522_ref_NP_001091264_1__homeobox_A9__Xenopus_laevis_
:0.00000):0.08650,
923_XENTR_ENSXETP00000001611_pep_known_scaffold_JGI_4_2_GL172692_1_1415310_1416638_1_gene_ENSXETG00000000724_transcript_ENSXETT00000001611_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.08650):0.02850):0.00000,((
810_ORNAN_ENSOANP00000014594_pep_known_ultracontig_OANA5_Ultra231_2298988_2301103_-1_gene_ENSOANG00000009170_transcript_ENSOANT00000014597_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.02900,
859_ORNAN_ENSOANP00000014595_pep_known_ultracontig_OANA5_Ultra231_2298988_2301103_-1_gene_ENSOANG00000009170_transcript_ENSOANT00000014598_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.02900):0.07500,
915_MACEU_ENSMEUP00000011278_pep_novel_scaffold_Meug_1_0_Scaffold140571_3217_5589_-1_gene_ENSMEUG00000012377_transcript_ENSMEUT00000012404_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.10400):0.01100):0.00000,
846_CALJA_ENSCJAP00000015074_pep_novel_chromosome_C_jacchus3_2_1_8_28530477_28533062_1_gene_ENSCJAG00000008096_transcript_ENSCJAT00000015908_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.11500):0.00000,
981_PANTR_ENSPTRP00000032501_pep_known_chromosome_CHIMP2_1_4_7_25751279_25758521_-1_gene_ENSPTRG00000019018_transcript_ENSPTRT00000035158_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.11500):0.00000,(((
989_gi_363730030_ref_XP_003640751_1__PREDICTED__homeobox_protein_Hox-A9-like__Gallus_gallus_
:0.00000,
990_gi_363730038_ref_XP_003640754_1__PREDICTED__homeobox_protein_Hox-A9-like__Gallus_gallus_
:0.00000):0.00000,
991_gi_363730219_ref_XP_003640782_1__PREDICTED__homeobox_protein_Hox-A9__Gallus_gallus_
:0.00000):0.02200,(
993_gi_224045308_ref_XP_002195243_1__PREDICTED__homeobox_A9__Taeniopygia_guttata_
:0.00000,
994_TAEGU_ENSTGUP00000003007_pep_novel_chromosome_taeGut3_2_4_2_52621121_52622902_-1_gene_ENSTGUG00000002921_transcript_ENSTGUT00000003036_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.00000):0.02200):0.09300):0.00100,
899_gi_255742449_gb_ACU32563_1__homeobox_protein_HoxB9__Callorhinchus_milii_
:0.11600):0.00200,
613_gi_255742474_gb_ACU32586_1__homeobox_protein_HoxD9__Callorhinchus_milii_
:0.11800):0.00150,(
300_gi_397327508_gb_AFO42770_1__HOXD9__Polyodon_spathula_
:0.03750,
564_gi_397327517_gb_AFO42778_1__HOXD9__Polyodon_spathula_
:0.03750):0.08200):0.00000,(
352_gi_225715912_gb_ACO13802_1__Homeobox_protein_Hox-D9a__Esox_lucius_
:0.10350,((
372_gi_157816013_gb_ABV82025_1__homeobox_protein_HoxD9aa__Salmo_salar_
:0.00000,
373_gi_213511290_ref_NP_001135141_1__homeobox_protein_HoxD9aa__Salmo_salar_
:0.00000):0.01450,
382_gi_158702367_gb_ABW77554_1__homeobox_protein_HoxD9aa__Salmo_salar_
:0.01450):0.08900):0.01600):0.00150,
964_gi_327280442_ref_XP_003224961_1__PREDICTED__homeobox_protein_Hox-A9-like__Anolis_carolinensis_
:0.12100):0.00600,(
342_gi_169154435_emb_CAQ15518_1__homeo_box_D9a__Danio_rerio_
:0.04350,(
398_gi_34784079_gb_AAH56695_1__Homeo_box_D9a__Danio_rerio_
:0.01000,(((
428_gi_115502399_sp_Q9PWM6_2_HXD9A_DANRE_RecName__Full=Homeobox_protein_Hox-D9a__Short=Hox-D9
:0.00000,
429_gi_237681166_ref_NP_571201_3__homeobox_protein_Hox-D9a__Danio_rerio_
:0.00000):0.00000,
430_DANRE_ENSDARP00000076790_pep_known_chromosome_Zv9_9_1954804_1956526_-1_gene_ENSDARG00000059274_transcript_ENSDART00000082354_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.00000):0.00300,
448_gi_4322104_gb_AAD15961_1__homeobox_protein__Danio_rerio_
:0.00300):0.00700):0.03350):0.08350):0.00000,
345_gi_225707232_gb_ACO09462_1__Homeobox_protein_Hox-D9a__Osmerus_mordax_
:0.12700):0.00000,(
422_gi_332692531_gb_AEE90206_1__Homeobox_D9a__Anguilla_anguilla_
:0.00200,
425_gi_385654528_gb_AFI62022_1__Hox-D9a__Anguilla_japonica_
:0.00200):0.12500):0.00100,((
196_gi_157816027_gb_ABV82032_1__homeobox_protein_HoxD9ab__Salmo_salar_
:0.00000,
197_gi_213514096_ref_NP_001135095_1__homeobox_protein_HoxD9ab__Salmo_salar_
:0.00000):0.00600,
222_gi_158702377_gb_ABW77563_1__homeobox_protein_HoxD9ab__Salmo_salar_
:0.00600):0.12200):0.00200,(
374_gi_332692540_gb_AEE90214_1__Homeobox_D9b__Anguilla_anguilla_
:0.00000,
375_gi_385654537_gb_AFI62030_1__Hox-D9b__Anguilla_japonica_
:0.00000):0.13000):0.00200,(
449_gi_400180336_gb_AFP73303_1__Hoxa9beta__Polyodon_spathula_
:0.09650,
932_gi_400180324_gb_AFP73292_1__Hoxa9alpha__Polyodon_spathula_
:0.09650):0.03550):0.00050,
506_gi_66476113_gb_AAX63764_2__HoxC9bi__Oncorhynchus_mykiss_
:0.13250):0.00250,(
461_TETNI_ENSTNIP00000020079_pep_novel_chromosome_TETRAODON8_2_13432202_13433362_-1_gene_ENSTNIG00000016957_transcript_ENSTNIT00000020310_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.10200,
484_gi_47218112_emb_CAG09984_1__unnamed_protein_product__Tetraodon_nigroviridis_
:0.10200):0.03300):0.00150,(
487_gi_220898218_gb_ACL81471_1__HoxD9__Latimeria_menadoensis_
:0.00000,
501_LATCH_ENSLACP00000010410_pep_novel_scaffold_LatCha1_JH127184_1_399842_400954_-1_gene_ENSLACG00000009170_transcript_ENSLACT00000010489_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.00000):0.13650):0.00150,((
421_gi_348519659_ref_XP_003447347_1__PREDICTED__homeobox_protein_Hox-D9a-like__Oreochromis_niloticus_
:0.00000,
423_ORENI_ENSONIP00000010828_pep_novel_scaffold_Orenil1_0_GL831187_1_822318_825907_-1_gene_ENSONIG00000008613_transcript_ENSONIT00000010837_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.00000):0.00500,
452_gi_154183856_gb_ABS70794_1__Hoxd9a__Haplochromis_burtoni_
:0.00500):0.13300):0.00000,
456_GADMO_ENSGMOP00000004528_pep_novel_genescaffold_gadMor1_GeneScaffold_1009_385317_386394_-1_gene_ENSGMOG00000004271_transcript_ENSGMOT00000004664_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.13800):0.00000,((
467_GASAC_ENSGACP00000006017_pep_novel_group_BROADS1_groupXVI_9814135_9815452_-1_gene_ENSGACG00000004556_transcript_ENSGACT00000006034_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.01400,
485_gi_58803015_gb_AAW82627_1__HoxD9a__Gasterosteus_aculeatus_
:0.01400):0.00050,
891_GASAC_ENSGACP00000006013_pep_novel_group_BROADS1_groupXVI_9813729_9815121_-1_gene_ENSGACG00000004556_transcript_ENSGACT00000006030_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.01450):0.12350):0.00750,((
652_ORYLA_ENSORLP00000021948_pep_known_chromosome_MEDAKA1_21_24614901_24616181_1_gene_ENSORLG00000017544_transcript_ENSORLT00000021949_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.00850,((
860_gi_74267581_dbj_BAE44289_1__hoxD9a__Oryzias_latipes_
:0.00000,
861_gi_83016978_dbj_BAE53499_1__hoxD9a__Oryzias_latipes_
:0.00000):0.00000,
922_ORYLA_ENSORLP00000021949_pep_known_chromosome_MEDAKA1_21_24614901_24616114_1_gene_ENSORLG00000017544_transcript_ENSORLT00000021950_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.00000):0.00850):0.01750,((
954_gi_6252902_dbj_BAA86250_1__HOXD9A__Oryzias_latipes_
:0.00000,
956_gi_319996661_ref_NP_001188420_1__homeobox_protein_Hox-D9__Oryzias_latipes_
:0.00000):0.00000,
957_gi_21263750_sp_Q9PVR2_1_HXD9_ORYLA_RecName__Full=Homeobox_protein_Hox-D9
:0.00000):0.02600):0.11950):0.00600,(((
392_gi_94482850_gb_ABF22465_1__homeobox_protein_HoxD9a__Takifugu_rubripes_
:0.00000,
393_gi_119370801_sp_Q1KKS9_1_HXD9A_TAKRU_RecName__Full=Homeobox_protein_Hox-D9a
:0.00000):0.00000,
394_TAKRU_ENSTRUP00000044917_pep_known_scaffold_FUGU4_scaffold_100_358374_359556_-1_gene_ENSTRUG00000017521_transcript_ENSTRUT00000045069_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.00000):0.00850,
523_TAKRU_ENSTRUP00000044916_pep_known_scaffold_FUGU4_scaffold_100_358374_359556_-1_gene_ENSTRUG00000017521_transcript_ENSTRUT00000045068_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.00850):0.14300):0.00850):0.01050,(((((((
752_gi_94733688_emb_CAK10848_1__homeo_box_A9a__Danio_rerio_
:0.00000,
753_gi_60416115_gb_AAH90700_1__Homeo_box_A9a__Danio_rerio_
:0.00000):0.00000,
754_gi_182889636_gb_AAI65442_1__Hoxa9a_protein__Danio_rerio_
:0.00000):0.00000,
755_gi_62751911_ref_NP_571607_2__homeobox_protein_Hox-A9a__Danio_rerio_
:0.00000):0.00000,
756_gi_110282970_sp_Q9PWL6_2_HXA9A_DANRE_RecName__Full=Homeobox_protein_Hox-A9a__Short=Hoxx9
:0.00000):0.00000,
757_DANRE_ENSDARP00000009894_pep_known_chromosome_Zv9_19_19215846_19217890_1_gene_ENSDARG00000009461_transcript_ENSDART00000006934_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.00000):0.00000,
758_DANRE_ENSDARP00000121644_pep_known_chromosome_Zv9_19_19213175_19217054_1_gene_ENSDARG00000009461_transcript_ENSDART00000147736_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.00000):0.02100,
779_gi_4322064_gb_AAD15941_1__homeobox_protein__Danio_rerio_
:0.02100):0.14950):0.00550,
466_GASAC_ENSGACP00000009434_pep_novel_group_BROADS1_groupX_9901356_9902621_-1_gene_ENSGACG00000007123_transcript_ENSGACT00000009454_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.17600):0.00050,(
965_gi_385654455_gb_AFI61959_1__Hox-A9a__Anguilla_japonica_
:0.00600,
983_gi_332692469_gb_AEE90151_1__Homeobox_A9a__Anguilla_anguilla_
:0.00600):0.17050):0.00600,(((((
549_gi_94482759_gb_ABF22379_1__homeobox_protein_HoxA9a__Takifugu_rubripes_
:0.00000,
550_gi_2341093_gb_AAB68684_1__homeodomain_protein_HOXA-9__Takifugu_rubripes_
:0.00000):0.00000,
552_gi_6016294_sp_O42506_1_HXA9A_TAKRU_RecName__Full=Homeobox_protein_Hox-A9a__Short=HoxA-9
:0.00000):0.00000,
553_TAKRU_ENSTRUP00000040839_pep_known_scaffold_FUGU4_scaffold_12_2360012_2361166_-1_gene_ENSTRUG00000015974_transcript_ENSTRUT00000040981_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.00000):0.07750,(
566_TETNI_ENSTNIP00000000288_pep_known_chromosome_TETRAODON8_21_3028251_3029412_1_gene_ENSTNIG00000001582_transcript_ENSTNIT00000001153_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.00000,
586_gi_47229431_emb_CAF99419_1__unnamed_protein_product__Tetraodon_nigroviridis_
:0.00000):0.07750):0.02850,(((
578_gi_5669602_gb_AAD46396_1_AF089743_2_homeodomain_protein_Hox-A9__Morone_saxatilis_
:0.00000,
579_gi_14916603_sp_Q9PWD5_1_HXA9_MORSA_RecName__Full=Homeobox_protein_Hox-A9
:0.00000):0.07050,((
655_gi_348522807_ref_XP_003448915_1__PREDICTED__homeobox_protein_Hox-A9-like__Oreochromis_niloticus_
:0.00000,
656_ORENI_ENSONIP00000005788_pep_novel_scaffold_Orenil1_0_GL831202_1_579265_580451_-1_gene_ENSONIG00000004597_transcript_ENSONIT00000005792_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.00000):0.01100,
676_gi_154183832_gb_ABS70772_1__Hoxa9a__Haplochromis_burtoni_
:0.01100):0.05950):0.01950,(((
695_gi_6252950_dbj_BAA86255_1__HOXA9A__Oryzias_latipes_
:0.00000,
696_gi_157278072_ref_NP_001098136_1__HOXA9A__Oryzias_latipes_
:0.00000):0.01200,(
709_gi_83016927_dbj_BAE53459_1__hoxA9a__Oryzias_latipes_
:0.00000,
710_gi_74267513_dbj_BAE44255_1__hoxA9a__Oryzias_latipes_
:0.00000):0.01200):0.00200,
771_ORYLA_ENSORLP00000006337_pep_known_chromosome_MEDAKA1_11_10539573_10540702_-1_gene_ENSORLG00000005025_transcript_ENSORLT00000006338_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.01400):0.07600):0.01600):0.07650):0.00950,(
310_gi_158702218_gb_ABW77440_1__homeobox_protein_HoxA9aa__Salmo_salar_
:0.16000,((
864_gi_157816059_gb_ABV82048_1__homeobox_protein_HoxA9ab__Salmo_salar_
:0.00000,
865_gi_158702238_gb_ABW77450_1__homeobox_protein_HoxA9ab__Salmo_salar_
:0.00000):0.00000,
869_gi_213515310_ref_NP_001133038_1__homeobox_protein_HoxA9ab__Salmo_salar_
:0.00000):0.16000):0.03200):0.00650,
472_gi_121308924_dbj_BAF43727_1__transcription_factor_Hox9/10__Metacrinus_rotundus_
:0.19850):0.00850,
277_GADMO_ENSGMOP00000014810_pep_novel_genescaffold_gadMor1_GeneScaffold_1730_79103_80307_-1_gene_ENSGMOG00000013861_transcript_ENSGMOT00000015191_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.20700):0.02650):0.00550,
251_gi_8926609_gb_AAF81909_1__homeodomain-containing_protein_Hox11__Branchiostoma_floridae_
:0.23900):0.00500,(
568_gi_116574504_gb_ABK00020_1__hox_6__Saccoglossus_kowalevskii_
:0.00000,
569_gi_259013408_ref_NP_001158411_1__homeobox_6__Saccoglossus_kowalevskii_
:0.00000):0.24400):0.00000,(
706_gi_38016609_gb_AAR07638_1__transcription_factor_Hox9/10__Ptychodera_flava_
:0.12600,
897_gi_255755653_dbj_BAH96552_1__homeodomain_transcription_factor__Balanoglossus_simodensis_
:0.12600):0.11800):0.00150,
516_gi_217035835_gb_ACJ74389_1__Hox10__Branchiostoma_lanceolatum_
:0.24550):0.00050,(
350_gi_116574506_gb_ABK00021_1__hox_9/10__Saccoglossus_kowalevskii_
:0.00000,
351_gi_259013410_ref_NP_001158412_1__homeobox_9/10__Saccoglossus_kowalevskii_
:0.00000):0.24600):0.00200,((
454_gi_38016607_gb_AAR07637_1__transcription_factor_Hox6__Ptychodera_flava_
:0.10650,
567_gi_254692760_dbj_BAH23875_2__transcription_factor_Hox6__Balanoglossus_misakiensis_
:0.10650):0.00000,
530_gi_255755647_dbj_BAH96549_1__homeodomain_transcription_factor__Balanoglossus_simodensis_
:0.10650):0.14150):0.00700,(
399_gi_254692758_dbj_BAH23874_2__transcription_factor_Hox5__Balanoglossus_misakiensis_
:0.05450,
431_gi_38016605_gb_AAR07636_1__transcription_factor_Hox5__Ptychodera_flava_
:0.05450):0.20050):0.01100,((
643_gi_83016948_dbj_BAE53475_1__hoxB5a__Oryzias_latipes_
:0.00000,
644_gi_74267539_dbj_BAE44268_1__hoxB5a__Oryzias_latipes_
:0.00000):0.04400,
683_ORYLA_ENSORLP00000021319_pep_novel_chromosome_MEDAKA1_8_24366585_24368533_1_gene_ENSORLG00000017041_transcript_ENSORLT00000021320_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.04400):0.22200):0.00150,(((((((((
733_NEMVE_jgi_Nemve1_197021_fgenesh1_pg_scaffold_4000101
:0.00000,
734_NEMVE_jgi_Nemve1_238194_estExt_fgenesh1_pg_C_40100
:0.00000):0.00000,
735_NEMVE_jgi_Nemve1_158544_estExt_gwp_C_40217
:0.00000):0.00000,
736_NEMVE_jgi_Nemve1_158543_estExt_gwp_C_40216
:0.00000):0.00000,
737_NEMVE_jgi_Nemve1_158542_estExt_gwp_C_40215
:0.00000):0.00000,
738_NEMVE_jgi_Nemve1_158541_estExt_gwp_C_40214
:0.00000):0.00000,
739_NEMVE_jgi_Nemve1_177792_estExt_GenewiseH_1_C_40217
:0.00000):0.00000,
740_NEMVE_jgi_Nemve1_177791_estExt_GenewiseH_1_C_40216
:0.00000):0.00000,
741_NEMVE_jgi_Nemve1_177790_estExt_GenewiseH_1_C_40215
:0.00000):0.00000,
742_NEMVE_jgi_Nemve1_177789_estExt_GenewiseH_1_C_40214
:0.00000):0.26750):0.00550,(
605_gi_251857555_gb_ACT22573_1__posterior_Hox2__Convolutriloba_retrogemma_
:0.03850,(
830_gi_251857553_gb_ACT22572_1__posterior_Hox1__Convolutriloba_retrogemma_
:0.03350,
885_gi_258678269_gb_ACV87741_1__posterior_class_Hox_protein__Convolutriloba_longifissura_
:0.03350):0.00500):0.23450):0.00500,
704_gi_88604716_gb_ABD46729_1__homeobox_protein_sex_comb_reduced__Nymphon_gracile_
:0.27800):0.02100,
243_gi_321475836_gb_EFX86798_1__putative_homeotic_abdominal-B_protein__Daphnia_pulex_
:0.29900):0.00200):0.00700,(
262_gi_1574934_gb_AAB09408_1__HEHBOX10__partial__Heliocidaris_erythrogramma_
:0.10550,(
266_gi_390351579_ref_XP_783216_2__PREDICTED__homeobox_protein_abdominal-A_homolog__Strongylocentrotus_purpuratus_
:0.00000,
267_STRPU_gi_390351579_ref_XP_783216_2__PREDICTED__homeobox_protein_abdominal-A_homolog__Strongylocentrotus_purpuratus_
:0.00000):0.10550):0.20250):0.02000,(
672_gi_268576250_ref_XP_002643105_1__C__briggsae_CBR-PHP-3_protein__Caenorhabditis_briggsae_
:0.00000,
715_CAEBR_CBG23030_pep_known_chromosome_CB4_chrIII_13547598_13550579_1_gene_CBG23030_transcript_CBG23030
:0.00000):0.32800):0.00100,((((((((((((((((((((((((((((((((((
60_TETNI_ENSTNIP00000004145_pep_known_chromosome_TETRAODON8_8_6784648_6785771_1_gene_ENSTNIG00000001781_transcript_ENSTNIT00000004279_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.00000,
594_gi_47225515_emb_CAG11998_1__unnamed_protein_product__Tetraodon_nigroviridis_
:0.00000):0.01400,(
151_TAKRU_ENSTRUP00000039266_pep_novel_scaffold_FUGU4_scaffold_48_1084983_1085990_-1_gene_ENSTRUG00000015364_transcript_ENSTRUT00000039407_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.01300,((
155_gi_94482779_gb_ABF22398_1__homeobox_protein_HoxA13b__Takifugu_rubripes_
:0.00000,
156_gi_119370781_sp_Q1KKZ6_1_HXADB_TAKRU_RecName__Full=Homeobox_protein_Hox-A13b
:0.00000):0.01150,
157_TAKRU_ENSTRUP00000039265_pep_novel_scaffold_FUGU4_scaffold_48_1084734_1085990_-1_gene_ENSTRUG00000015364_transcript_ENSTRUT00000039406_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.01150):0.00150):0.00100):0.03500,(
359_gi_158702250_gb_ABW77456_1__homeobox_protein_HoxA13b__Salmo_salar_
:0.00250,(
362_gi_157816071_gb_ABV82054_1__homeobox_protein_HoxA13b__Salmo_salar_
:0.00000,
363_gi_213511200_ref_NP_001133042_1__homeobox_protein_Hox-A13b__Salmo_salar_
:0.00000):0.00250):0.04650):0.00300,(((
146_gi_83016936_dbj_BAE53466_1__hoxA13b__Oryzias_latipes_
:0.00000,
147_gi_74267529_dbj_BAE44263_1__hoxA13b__Oryzias_latipes_
:0.00000):0.00000,
149_ORYLA_ENSORLP00000009524_pep_known_chromosome_MEDAKA1_16_13115192_13116162_1_gene_ENSORLG00000007597_transcript_ENSORLT00000009525_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.00000):0.01300,
154_ORYLA_ENSORLP00000009523_pep_known_chromosome_MEDAKA1_16_13115192_13116836_1_gene_ENSORLG00000007597_transcript_ENSORLT00000009524_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.01300):0.03900):0.01200,(
76_GASAC_ENSGACP00000010963_pep_novel_group_BROADS1_groupXX_9710597_9711722_1_gene_ENSGACG00000008296_transcript_ENSGACT00000010986_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.04150,(((
122_gi_154183803_gb_ABS70745_1__Hoxa13b__Haplochromis_burtoni_
:0.00000,
123_gi_348533874_ref_XP_003454429_1__PREDICTED__homeobox_protein_Hox-A13b-like_isoform_1__Oreochromis_niloticus_
:0.00000):0.00000,
125_ORENI_ENSONIP00000003711_pep_novel_scaffold_Orenil1_0_GL831286_1_1178401_1180455_1_gene_ENSONIG00000002962_transcript_ENSONIT00000003712_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.00000):0.01000,
130_gi_348533876_ref_XP_003454430_1__PREDICTED__homeobox_protein_Hox-A13b-like_isoform_2__Oreochromis_niloticus_
:0.01000):0.03150):0.02250):0.00700,(
152_gi_308323811_gb_ADO29041_1__homeobox_protein_hox-a13b__Ictalurus_punctatus_
:0.00000,
153_gi_318066041_ref_NP_001187726_1__homeobox_protein_hox-a13b__Ictalurus_punctatus_
:0.00000):0.07100):0.00200,(
207_gi_332692475_gb_AEE90156_1__Homeobox_A13b__Anguilla_anguilla_
:0.00000,
208_gi_385654466_gb_AFI61968_1__Hox-A13b__Anguilla_japonica_
:0.00000):0.07300):0.00700,
237_GADMO_ENSGMOP00000006061_pep_novel_genescaffold_gadMor1_GeneScaffold_1626_110958_112097_1_gene_ENSGMOG00000005714_transcript_ENSGMOT00000006236_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.08000):0.01400,(((((
117_gi_94733686_emb_CAK10846_1__homeo_box_A13a__Danio_rerio_
:0.00000,
118_gi_126631819_gb_AAI33883_1__Hoxa13a_protein__Danio_rerio_
:0.00000):0.00000,
119_gi_110282972_sp_Q6W990_2_HXADA_DANRE_RecName__Full=Homeobox_protein_Hox-A13a
:0.00000):0.00000,
120_gi_147904274_ref_NP_001078963_1__homeobox_protein_Hox-A13a__Danio_rerio_
:0.00000):0.00000,
121_DANRE_ENSDARP00000003928_pep_known_chromosome_Zv9_19_19195251_19197036_1_gene_ENSDARG00000007609_transcript_ENSDART00000026989_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.00000):0.00400,
134_gi_34484434_gb_AAQ72839_1__HoxA13a__Danio_rerio_
:0.00400):0.09000):0.00350,((((
187_gi_60416146_gb_AAH90761_1__Hoxa13b_protein__Danio_rerio_
:0.00000,
188_gi_197247288_gb_AAI65536_1__Hoxa13b_protein__Danio_rerio_
:0.00000):0.00000,
198_gi_110282973_sp_P79724_3_HXADB_DANRE_RecName__Full=Homeobox_protein_Hox-A13b__Short=Hox-A13
:0.00000):0.00000,
200_DANRE_ENSDARP00000052661_pep_known_chromosome_Zv9_16_22980334_22982266_1_gene_ENSDARG00000036254_transcript_ENSDART00000052662_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.00000):0.01950,(
209_gi_4322053_gb_AAD15936_1__homeobox_protein__Danio_rerio_
:0.00000,
210_gi_18858821_ref_NP_571269_1__homeobox_protein_Hox-A13b__Danio_rerio_
:0.00000):0.01950):0.07800):0.00150,(((((
169_gi_154183835_gb_ABS70775_1__Hoxa13a__Haplochromis_burtoni_
:0.00000,
170_gi_348522813_ref_XP_003448918_1__PREDICTED__homeobox_protein_Hox-A13a-like__Oreochromis_niloticus_
:0.00000):0.00000,
171_ORENI_ENSONIP00000005793_pep_novel_scaffold_Orenil1_0_GL831202_1_602033_606142_-1_gene_ENSONIG00000004601_transcript_ENSONIT00000005797_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.00000):0.05600,((((
189_gi_94482756_gb_ABF22376_1__homeobox_protein_HoxA13a__Takifugu_rubripes_
:0.00000,
190_gi_119370780_sp_Q1KL22_1_HXADA_TAKRU_RecName__Full=Homeobox_protein_Hox-A13a
:0.00000):0.00000,
191_TAKRU_ENSTRUP00000040931_pep_known_scaffold_FUGU4_scaffold_12_2381059_2382351_-1_gene_ENSTRUG00000016010_transcript_ENSTRUT00000041073_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.00000):0.00000,
364_TAKRU_ENSTRUP00000046717_pep_novel_scaffold_FUGU4_scaffold_346_195264_196175_1_gene_ENSTRUG00000018251_transcript_ENSTRUT00000046875_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.00000):0.04500,(
216_gi_47229429_emb_CAF99417_1__unnamed_protein_product__Tetraodon_nigroviridis_
:0.00000,
219_TETNI_ENSTNIP00000012067_pep_known_chromosome_TETRAODON8_21_3002908_3004161_1_gene_ENSTNIG00000009207_transcript_ENSTNIT00000012258_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.00000):0.04500):0.01100):0.01900,((
203_gi_83016924_dbj_BAE53456_1__hoxA13a__Oryzias_latipes_
:0.00000,
204_gi_74267519_dbj_BAE44258_1__hoxA13a__Oryzias_latipes_
:0.00000):0.00000,
205_ORYLA_ENSORLP00000006355_pep_known_chromosome_MEDAKA1_11_10561890_10563229_-1_gene_ENSORLG00000005043_transcript_ENSORLT00000006356_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.00000):0.07500):0.01850,
268_GADMO_ENSGMOP00000014823_pep_novel_genescaffold_gadMor1_GeneScaffold_1730_103152_104231_-1_gene_ENSGMOG00000013892_transcript_ENSGMOT00000015205_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.09350):0.00550):0.00450,
181_GASAC_ENSGACP00000009457_pep_known_group_BROADS1_groupX_9924555_9926349_-1_gene_ENSGACG00000007134_transcript_ENSGACT00000009477_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.10350):0.00450,(((
90_gi_400180322_gb_AFP73290_1__Hoxa13alpha__Polyodon_spathula_
:0.02100,(
340_gi_400180333_gb_AFP73300_1__Hoxa13beta__Polyodon_spathula_
:0.00000,
489_gi_145833951_gb_ABP96784_1__transcription_factor_HOXA13__partial__Polyodon_spathula_
:0.00000):0.02100):0.05150,((((
96_gi_20278975_gb_AAM18671_1_AF479755_1_homeobox_A13__Heterodontus_francisci_
:0.01250,
104_gi_301128869_emb_CBL59333_1__HoxA13__Scyliorhinus_canicula_
:0.01250):0.00750,
109_gi_254212171_gb_ACT65746_1__Hoxa13__Leucoraja_erinacea_
:0.02000):0.01250,
110_gi_255742429_gb_ACU32544_1__homeobox_protein_HoxA13__Callorhinchus_milii_
:0.03250):0.03600,((((((((((
230_ANOCA_ENSACAP00000010093_pep_novel_scaffold_AnoCar2_0_GL343275_1_1375087_1379934_1_gene_ENSACAG00000010302_transcript_ENSACAT00000010300_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.02050,((
418_gi_220898176_gb_ACL81432_1__HoxA13__Latimeria_menadoensis_
:0.00000,
419_LATCH_ENSLACP00000019815_pep_novel_scaffold_LatCha1_JH126711_1_2091449_2092713_-1_gene_ENSLACG00000017423_transcript_ENSLACT00000019953_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.00000):0.01250,
982_gi_28629637_gb_AAO43024_1__HoxA13__Latimeria_menadoensis_
:0.01250):0.00800):0.00000,(((((
305_gi_15418784_gb_AAK38163_1__homeo_box_A13__Gallus_gallus_
:0.00000,
306_gi_363730080_ref_XP_003640766_1__PREDICTED__homeobox_protein_Hox-A13-like__Gallus_gallus_
:0.00000):0.00000,
307_gi_45383838_ref_NP_989470_1__homeobox_protein_Hox-A13__Gallus_gallus_
:0.00000):0.00000,
309_gi_20138643_sp_Q90X25_1_HXA13_CHICK_RecName__Full=Homeobox_protein_Hox-A13
:0.00000):0.00000,
321_gi_363730044_ref_XP_003640757_1__PREDICTED__homeobox_protein_Hox-A13-like__Gallus_gallus_
:0.00000):0.00750,
325_gi_224045310_ref_XP_002195397_1__PREDICTED__homeobox_A13__Taeniopygia_guttata_
:0.00750):0.01300):0.00000,
387_ORNAN_ENSOANP00000014598_pep_known_ultracontig_OANA5_Ultra231_2341837_2395281_-1_gene_ENSOANG00000009173_transcript_ENSOANT00000014601_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.02050):0.00000,
427_gi_327280466_ref_XP_003224973_1__PREDICTED__homeobox_protein_Hox-A13b-like__Anolis_carolinensis_
:0.02050):0.00000,
518_ORNAN_ENSOANP00000014599_pep_novel_ultracontig_OANA5_Ultra231_2341834_2344573_-1_gene_ENSOANG00000009173_transcript_ENSOANT00000014602_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.02050):0.00000,(
637_MONDO_ENSMODP00000000533_pep_novel_chromosome_BROADO5_8_297309851_297311940_1_gene_ENSMODG00000000449_transcript_ENSMODT00000000547_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.00000,
858_SARHA_ENSSHAP00000019523_pep_novel_scaffold_DEVIL7_0_GL861706_1_2237477_2240432_1_gene_ENSSHAG00000016581_transcript_ENSSHAT00000019680_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.00000):0.02050):0.00050,(((((((((((((((((((((((
265_CALJA_ENSCJAP00000015128_pep_novel_chromosome_C_jacchus3_2_1_8_28446831_28493607_1_gene_ENSCJAG00000008192_transcript_ENSCJAT00000015966_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.00000,
941_EQUCA_ENSECAP00000011829_pep_known_chromosome_EquCab2_4_58226715_58229178_-1_gene_ENSECAG00000014192_transcript_ENSECAT00000014781_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.00000):0.00000,
322_PONAB_ENSPPYP00000019837_pep_known_chromosome_PPYG2_7_57250549_57252209_1_gene_ENSPPYG00000017697_transcript_ENSPPYT00000020620_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.00000):0.00000,
330_GORGO_ENSGGOP00000023061_pep_novel_chromosome_gorGor3_1_7_27448004_27451486_-1_gene_ENSGGOG00000005309_transcript_ENSGGOT00000025719_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.00000):0.00000,
333_MICMU_ENSMICP00000000457_pep_novel_genescaffold_micMur1_GeneScaffold_568_806438_808074_-1_gene_ENSMICG00000000502_transcript_ENSMICT00000000502_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.00000):0.00000,
334_PANTR_ENSPTRP00000048099_pep_known_chromosome_CHIMP2_1_4_7_25785697_25788919_-1_gene_ENSPTRG00000028643_transcript_ENSPTRT00000055569_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.00000):0.00000,
335_HOMSA_ENSP00000222753_pep_known_chromosome_GRCh37_7_27234637_27239725_-1_gene_ENSG00000106031_transcript_ENST00000222753_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.00000):0.00000,
336_HOMSA_gi_24497554_ref_NP_000513_2__homeobox_protein_Hox-A13__Homo_sapiens_
:0.00000):0.00000,
357_CAVPO_ENSCPOP00000017024_pep_novel_scaffold_cavPor3_scaffold_44_3935601_3980020_-1_gene_ENSCPOG00000024869_transcript_ENSCPOT00000021387_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.00000):0.00000,
402_GORGO_ENSGGOP00000005197_pep_novel_chromosome_gorGor3_1_7_27449321_27451201_-1_gene_ENSGGOG00000005309_transcript_ENSGGOT00000005333_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.00000):0.00000,
403_CANFA_ENSCAFP00000004403_pep_novel_chromosome_CanFam3_1_14_40371987_40374898_-1_gene_ENSCAFG00000002970_transcript_ENSCAFT00000004756_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.00000):0.00000,
420_MYOLU_ENSMLUP00000007601_pep_putative_scaffold_Myoluc2_0_GL429819_3718069_3720392_1_gene_ENSMLUG00000008332_transcript_ENSMLUT00000008328_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.00000):0.00000,
424_OTOGA_ENSOGAP00000015689_pep_known_scaffold_OtoGar3_GL873547_1_9335349_9336846_-1_gene_ENSOGAG00000028983_transcript_ENSOGAT00000031806_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.00000):0.00000,
432_DIPOR_ENSDORP00000005921_pep_novel_genescaffold_dipOrd1_GeneScaffold_1458_149136_150673_-1_gene_ENSDORG00000006328_transcript_ENSDORT00000006326_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.00000):0.00000,
582_BOSTA_ENSBTAP00000043379_pep_known_chromosome_UMD3_1_4_69297275_69298937_1_gene_ENSBTAG00000014735_transcript_ENSBTAT00000046051_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.00000):0.00000,
628_ICTTR_ENSSTOP00000023204_pep_novel_scaffold_spetri2_JH393288_1_3825857_3827284_-1_gene_ENSSTOG00000029157_transcript_ENSSTOT00000026959_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.00000):0.00000,
671_SUSSC_ENSSSCP00000026595_pep_known_chromosome_Sscrofa10_2_18_50006832_50011480_1_gene_ENSSSCG00000029666_transcript_ENSSSCT00000031604_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.00000):0.00000,
975_MACMU_ENSMMUP00000017696_pep_known_chromosome_MMUL_1_3_99025861_99026977_1_gene_ENSMMUG00000013463_transcript_ENSMMUT00000018895_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.00000):0.00250,(((
408_RATNO_ENSRNOP00000010441_pep_known_chromosome_RGSC3_4_4_80558915_80560953_-1_gene_ENSRNOG00000007928_transcript_ENSRNOT00000010441_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.00000,
657_MUSMU_ENSMUSP00000125221_pep_known_chromosome_GRCm38_6_52257694_52260803_-1_gene_ENSMUSG00000038203_transcript_ENSMUST00000147595_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.00000):0.00000,
409_MUSMU_ENSMUSP00000039170_pep_known_chromosome_GRCm38_6_52258853_52260880_-1_gene_ENSMUSG00000038203_transcript_ENSMUST00000047993_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.00000):0.00000,
654_MUSMU_ENSMUSP00000110059_pep_known_chromosome_GRCm38_6_52258871_52260802_-1_gene_ENSMUSG00000038203_transcript_ENSMUST00000114416_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.00000):0.00250):0.00100,
493_OCHPR_ENSOPRP00000009582_pep_novel_genescaffold_pika_GeneScaffold_1021_165623_166990_-1_gene_ENSOPRG00000010498_transcript_ENSOPRT00000010486_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.00350):0.00300,
401_LOXAF_ENSLAFP00000000623_pep_novel_supercontig_loxAfr3_scaffold_5_31270065_31271497_1_gene_ENSLAFG00000000738_transcript_ENSLAFT00000000738_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.00650):0.00000,
604_ORYCU_ENSOCUP00000019213_pep_novel_chromosome_oryCun2_10_11915589_11916957_-1_gene_ENSOCUG00000024694_transcript_ENSOCUT00000021797_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.00650):0.00200,
369_NOMLE_ENSNLEP00000018232_pep_novel_supercontig_Nleu1_0_GL397330_1_7065675_7067180_-1_gene_ENSNLEG00000014997_transcript_ENSNLET00000019140_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.00850):0.00000,
808_AILME_ENSAMEP00000006192_pep_novel_scaffold_ailMel1_GL192349_1_2340583_2341833_1_gene_ENSAMEG00000005877_transcript_ENSAMET00000006446_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.00850):0.01250):0.01050,
289_PELSI_ENSPSIP00000002845_pep_novel_scaffold_PelSin_1_0_JH224654_1_8748616_8751675_-1_gene_ENSPSIG00000002765_transcript_ENSPSIT00000002856_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.03150):0.00000,
658_ECHTE_ENSETEP00000005515_pep_novel_genescaffold_TENREC_GeneScaffold_2951_52438_54477_-1_gene_ENSETEG00000006794_transcript_ENSETET00000006793_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.03150):0.00750,
293_gi_290760363_gb_ADD54543_1__HOXA13__Pantherophis_guttatus_
:0.03900):0.02950):0.00400):0.01100,((
328_gi_301607689_ref_XP_002933431_1__PREDICTED__homeobox_protein_Hox-A13-like__Xenopus__Silurana__tropicalis_
:0.00800,
383_XENTR_ENSXETP00000001626_pep_known_scaffold_JGI_4_2_GL172692_1_1384790_1387020_1_gene_ENSXETG00000000734_transcript_ENSXETT00000001626_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.00800):0.02200,(
331_gi_125858562_gb_AAI29575_1__Unknown__protein_for_MGC_160241___Xenopus_laevis_
:0.02300,(
384_gi_28268588_emb_CAC44975_2__homeobox_protein__Hoxa13__Xenopus_laevis_
:0.00000,
386_gi_147903857_ref_NP_001079321_1__homeobox_A13__Xenopus_laevis_
:0.00000):0.02300):0.00700):0.05350):0.02450):0.01700,(
185_gi_220898189_gb_ACL81444_1__HoxB13__Latimeria_menadoensis_
:0.00000,
186_LATCH_ENSLACP00000017646_pep_novel_scaffold_LatCha1_JH126617_1_1286518_1288039_-1_gene_ENSLACG00000015543_transcript_ENSLACT00000017776_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.00000):0.12500):0.00300,
324_gi_301128881_emb_CBL59344_1__HoxB13__Scyliorhinus_canicula_
:0.12800):0.00800,((((
231_gi_158702262_gb_ABW77462_1__homeobox_protein_HoxB13aa__Salmo_salar_
:0.00250,(
232_gi_157816081_gb_ABV82059_1__homeobox_protein_HoxB13aa__Salmo_salar_
:0.00000,
235_gi_213511801_ref_NP_001133045_1__homeobox_protein_HoxB13aa__Salmo_salar_
:0.00000):0.00250):0.00600,((
258_gi_157816099_gb_ABV82068_1__homeobox_protein_HoxB13ab__Salmo_salar_
:0.00000,
259_gi_158702274_gb_ABW77472_1__homeobox_protein_HoxB13ab__Salmo_salar_
:0.00000):0.00000,
261_gi_213512753_ref_NP_001133050_1__homeobox_protein_HoxB13ab__Salmo_salar_
:0.00000):0.00850):0.06450,(
270_DANRE_ENSDARP00000110135_pep_known_chromosome_Zv9_3_23945568_23948441_1_gene_ENSDARG00000056015_transcript_ENSDART00000129192_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.01900,(((
278_gi_108742095_gb_AAI17626_1__Homeo_box_B13a__Danio_rerio_
:0.00000,
279_gi_113676316_ref_NP_001038377_1__homeobox_protein_Hox-B13a__Danio_rerio_
:0.00000):0.00000,
280_gi_114149320_sp_Q1ECY2_1_HXBDA_DANRE_RecName__Full=Homeobox_protein_Hox-B13a
:0.00000):0.00000,
281_DANRE_ENSDARP00000072890_pep_novel_chromosome_Zv9_3_23945474_23947075_1_gene_ENSDARG00000056015_transcript_ENSDART00000078428_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.00000):0.01900):0.05400):0.03950,(
308_gi_385654474_gb_AFI61975_1__Hox-B13a__Anguilla_japonica_
:0.00100,
311_gi_332692483_gb_AEE90163_1__Homeobox_B13a__Anguilla_anguilla_
:0.00100):0.11150):0.02350):0.00600,
417_gi_255742450_gb_ACU32564_1__homeobox_protein_HoxB13__Callorhinchus_milii_
:0.14200):0.01000,(((((
67_GASAC_ENSGACP00000007419_pep_novel_group_BROADS1_groupXI_1524174_1526036_1_gene_ENSGACG00000005617_transcript_ENSGACT00000007438_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.01900,
69_GASAC_ENSGACP00000004473_pep_novel_group_BROADS1_groupXVII_612703_614501_1_gene_ENSGACG00000003421_transcript_ENSGACT00000004487_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.01900):0.05200,(((
103_gi_47217001_emb_CAG01629_1__unnamed_protein_product__Tetraodon_nigroviridis_
:0.00000,
116_TETNI_ENSTNIP00000000506_pep_known_chromosome_TETRAODON8_Un_random_5596687_5598429_-1_gene_ENSTNIG00000000761_transcript_ENSTNIT00000000226_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.00000):0.01800,
248_gi_34484442_gb_AAQ72843_1__HoxB13a__Sphoeroides_nephelus_
:0.01800):0.00100,((((
135_gi_94482793_gb_ABF22411_1__homeobox_protein_HoxB13a__Takifugu_rubripes_
:0.00000,
136_gi_119370791_sp_Q1KKY3_1_HXBDA_TAKRU_RecName__Full=Homeobox_protein_Hox-B13a
:0.00000):0.00000,
138_TAKRU_ENSTRUP00000013975_pep_known_scaffold_FUGU4_scaffold_3110_2081_3820_1_gene_ENSTRUG00000005751_transcript_ENSTRUT00000014039_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.00000):0.00250,
139_TAKRU_ENSTRUP00000023652_pep_novel_scaffold_FUGU4_scaffold_41_501809_503553_1_gene_ENSTRUG00000009416_transcript_ENSTRUT00000023750_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.00250):0.00850,(
145_TAKRU_ENSTRUP00000023653_pep_novel_scaffold_FUGU4_scaffold_41_501809_503547_1_gene_ENSTRUG00000009416_transcript_ENSTRUT00000023751_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.00250,
150_TAKRU_ENSTRUP00000013976_pep_known_scaffold_FUGU4_scaffold_3110_2081_3814_1_gene_ENSTRUG00000005751_transcript_ENSTRUT00000014040_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.00250):0.00850):0.00800):0.05200):0.02650,(
180_gi_154183794_gb_ABS70737_1__Hoxb13a__Haplochromis_burtoni_
:0.03150,((
214_gi_348517905_ref_XP_003446473_1__PREDICTED__homeobox_protein_Hox-B13a-like__Oreochromis_niloticus_
:0.00750,
221_ORENI_ENSONIP00000007784_pep_novel_scaffold_Orenil1_0_GL831179_1_56549_59250_1_gene_ENSONIG00000006178_transcript_ENSONIT00000007789_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.00750):0.00400,
255_ORENI_ENSONIP00000007785_pep_novel_scaffold_Orenil1_0_GL831179_1_56773_58819_1_gene_ENSONIG00000006178_transcript_ENSONIT00000007790_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.01150):0.02000):0.06600):0.00300,
95_GADMO_ENSGMOP00000016357_pep_novel_genescaffold_gadMor1_GeneScaffold_1236_14053_15576_-1_gene_ENSGMOG00000015284_transcript_ENSGMOT00000016773_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.10050):0.01950,(
199_ORYLA_ENSORLP00000021307_pep_known_chromosome_MEDAKA1_8_24280190_24281764_1_gene_ENSORLG00000017031_transcript_ENSORLT00000021308_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.00800,(
217_gi_83016952_dbj_BAE53479_1__hoxB13a__Oryzias_latipes_
:0.00000,
218_gi_74267547_dbj_BAE44272_1__hoxB13a__Oryzias_latipes_
:0.00000):0.00800):0.11200):0.03200):0.00100,(
228_gi_385654452_gb_AFI61956_1__Hox-A13a__Anguilla_japonica_
:0.01250,
661_gi_332692473_gb_AEE90155_1__Homeobox_A13a__partial__Anguilla_anguilla_
:0.01250):0.14050):0.00400,((((((((
107_gi_220898203_gb_ACL81457_1__HoxC13__Latimeria_menadoensis_
:0.00000,
457_gi_28629669_gb_AAO43040_1__HoxC13__Latimeria_menadoensis_
:0.00000):0.00100,
133_LATCH_ENSLACP00000019072_pep_novel_scaffold_LatCha1_JH126829_1_1733877_1737412_-1_gene_ENSLACG00000016784_transcript_ENSLACT00000019205_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.00100):0.02300,
378_gi_290760367_gb_ADD54546_1__HOXC13__Pantherophis_guttatus_
:0.02400):0.04650,(((
465_gi_332692506_gb_AEE90183_1__Homeobox_C13a__Anguilla_anguilla_
:0.00200,
514_gi_385654499_gb_AFI61996_1__Hox-C13a__Anguilla_japonica_
:0.00200):0.05500,(((
580_gi_385654510_gb_AFI62006_1__Hox-C13b__Anguilla_japonica_
:0.00150,
588_gi_332692517_gb_AEE90193_1__Homeobox_C13b__Anguilla_anguilla_
:0.00150):0.04850,((((
711_gi_122891064_emb_CAM14484_1__homeo_box_C13a__Danio_rerio_
:0.00000,
713_DANRE_ENSDARP00000093923_pep_known_chromosome_Zv9_23_36104488_36107430_1_gene_ENSDARG00000070353_transcript_ENSDART00000103149_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.00000):0.00400,
730_gi_133778721_gb_AAI34024_1__Hoxc13a_protein__Danio_rerio_
:0.00400):0.00450,((
724_gi_42491592_gb_AAS16937_1__Hoxc13a__Danio_rerio_
:0.00000,
725_gi_50233777_ref_NP_571618_1__homeobox_protein_Hox-C13a__Danio_rerio_
:0.00000):0.00000,
726_gi_60392440_sp_Q6JIY5_1_HXCDA_DANRE_RecName__Full=Homeobox_protein_Hox-C13a
:0.00000):0.00850):0.03450,(((
760_gi_83016971_dbj_BAE53494_1__hoxC13a__Oryzias_latipes_
:0.00000,
761_gi_74267575_dbj_BAE44286_1__hoxC13a__Oryzias_latipes_
:0.00000):0.00000,
763_ORYLA_ENSORLP00000009904_pep_known_chromosome_MEDAKA1_7_12836622_12839267_1_gene_ENSORLG00000007896_transcript_ENSORLT00000009905_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.00000):0.03050,
838_GASAC_ENSGACP00000012375_pep_novel_group_BROADS1_groupXII_11575429_11578171_1_gene_ENSGACG00000009389_transcript_ENSGACT00000012399_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.03050):0.01250):0.00700):0.00050,(
837_gi_154183812_gb_ABS70753_1__Hoxc13a__Haplochromis_burtoni_
:0.00150,(
842_gi_348521428_ref_XP_003448228_1__PREDICTED__homeobox_protein_Hox-C13a-like__Oreochromis_niloticus_
:0.00000,
843_ORENI_ENSONIP00000015408_pep_novel_scaffold_Orenil1_0_GL831196_1_1722395_1726540_1_gene_ENSONIG00000012232_transcript_ENSONIT00000015421_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.00000):0.00150):0.04900):0.00650):0.00750,((
539_gi_157815930_gb_ABV81984_1__homeobox_protein_HoxC13aa__Salmo_salar_
:0.00000,
541_gi_213512561_ref_NP_001132996_1__homeobox_protein_HoxC13aa__Salmo_salar_
:0.00000):0.00800,
540_gi_158702322_gb_ABW77513_1__homeobox_protein_HoxC13aa__Salmo_salar_
:0.00800):0.05650):0.00600):0.01200,(((
497_gi_158702342_gb_ABW77531_1__homeobox_protein_HoxC13ba__Salmo_salar_
:0.00000,
498_gi_157815968_gb_ABV82003_1__homeobox_protein_HoxC13ba__Salmo_salar_
:0.00000):0.00000,
499_gi_213510696_ref_NP_001135138_1__homeobox_protein_HoxC13ba__Salmo_salar_
:0.00000):0.06650,((
633_gi_157815986_gb_ABV82012_1__homeobox_protein_HoxC13bb__Salmo_salar_
:0.00000,
634_gi_158702353_gb_ABW77541_1__homeobox_protein_HoxC13bb__Salmo_salar_
:0.00000):0.00000,
636_gi_213511002_ref_NP_001133015_1__homeobox_protein_HoxC13bb__Salmo_salar_
:0.00000):0.06650):0.01600):0.01350,(
303_gi_301614388_ref_XP_002936691_1__PREDICTED__homeobox_protein_Hox-C13a-like__Xenopus__Silurana__tropicalis_
:0.00000,
304_XENTR_ENSXETP00000053916_pep_known_scaffold_JGI_4_2_GL172862_1_280901_284160_1_gene_ENSXETG00000025184_transcript_ENSXETT00000053916_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.00000):0.09600):0.03150,
144_GALGA_ENSGALP00000017746_pep_novel_chromosome_WASHUC2_Un_random_4242272_4246441_1_gene_ENSGALG00000010923_transcript_ENSGALT00000017767_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.12750):0.00600,
616_gi_255742459_gb_ACU32572_1__homeobox_protein_HoxC13__Callorhinchus_milii_
:0.13350):0.02350):0.00700,
299_gi_187936703_dbj_BAG32149_1__Hox13_homolog__Lethenteron_camtschaticum_
:0.16400):0.00250,(((((((((((((((
213_ORYCU_ENSOCUP00000022744_pep_novel_chromosome_oryCun2_19_38666650_38668827_1_gene_ENSOCUG00000012816_transcript_ENSOCUT00000028686_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.04050,
453_ORYCU_ENSOCUP00000011026_pep_novel_chromosome_oryCun2_19_38666578_38668409_1_gene_ENSOCUG00000012816_transcript_ENSOCUT00000012813_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.04050):0.00150,
543_OCHPR_ENSOPRP00000009236_pep_novel_genescaffold_pika_GeneScaffold_3292_31488_33160_-1_gene_ENSOPRG00000010125_transcript_ENSOPRT00000010109_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.04200):0.00250,(
469_DIPOR_ENSDORP00000007854_pep_novel_genescaffold_dipOrd1_GeneScaffold_4373_8004_9924_-1_gene_ENSDORG00000008369_transcript_ENSDORT00000008369_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.03450,
476_ICTTR_ENSSTOP00000013380_pep_novel_scaffold_spetri2_JH393300_1_12688606_12690502_1_gene_ENSSTOG00000014942_transcript_ENSSTOT00000014935_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.03450):0.01000):0.00100,(((
348_EQUCA_ENSECAP00000011354_pep_known_chromosome_EquCab2_11_24741093_24743227_-1_gene_ENSECAG00000013619_transcript_ENSECAT00000014223_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.03150,((
455_TURTR_ENSTTRP00000006920_pep_novel_scaffold_turTru1_scaffold_115054_21574_23381_-1_gene_ENSTTRG00000007314_transcript_ENSTTRT00000007314_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.02950,
468_SUSSC_ENSSSCP00000018589_pep_known_chromosome_Sscrofa10_2_12_24904057_24905884_-1_gene_ENSSSCG00000017541_transcript_ENSSSCT00000019095_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.02950):0.00100,
515_BOSTA_ENSBTAP00000019523_pep_known_chromosome_UMD3_1_19_38428299_38430120_1_gene_ENSBTAG00000014663_transcript_ENSBTAT00000019523_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.03050):0.00100):0.00750,
460_FELCA_ENSFCAP00000001961_pep_novel_scaffold_CAT_scaffold_151827_165591_167442_-1_gene_ENSFCAG00000002120_transcript_ENSFCAT00000002120_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.03900):0.00600,(((((((
474_PONAB_ENSPPYP00000009986_pep_known_chromosome_PPYG2_17_random_12631826_12633644_-1_gene_ENSPPYG00000008904_transcript_ENSPPYT00000010386_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.00000,
475_PANTR_ENSPTRP00000015908_pep_known_chromosome_CHIMP2_1_4_17_8867684_8871682_1_gene_ENSPTRG00000009360_transcript_ENSPTRT00000017183_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.00000):0.00000,
477_GORGO_ENSGGOP00000001913_pep_novel_chromosome_gorGor3_1_5_35356546_35360559_1_gene_ENSGGOG00000001945_transcript_ENSGGOT00000001955_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.00000):0.00000,
478_HOMSA_ENSP00000290295_pep_known_chromosome_GRCh37_17_46802125_46806540_-1_gene_ENSG00000159184_transcript_ENST00000290295_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.00000):0.00000,
479_HOMSA_gi_62865866_ref_NP_006352_2__homeobox_protein_Hox-B13__Homo_sapiens_
:0.00000):0.00250,
494_MACMU_ENSMMUP00000027467_pep_known_chromosome_MMUL_1_16_32951159_32953504_-1_gene_ENSMMUG00000020872_transcript_ENSMMUT00000029354_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.00250):0.00800,
538_NOMLE_ENSNLEP00000003131_pep_novel_supercontig_Nleu1_0_GL397444_1_1201010_1205068_-1_gene_ENSNLEG00000002594_transcript_ENSNLET00000003290_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.01050):0.03100,(
491_OTOGA_ENSOGAP00000016185_pep_novel_scaffold_OtoGar3_GL873537_1_26901588_26903502_-1_gene_ENSOGAG00000032643_transcript_ENSOGAT00000028098_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.03150,
503_MICMU_ENSMICP00000006863_pep_novel_genescaffold_micMur1_GeneScaffold_1449_200054_201869_-1_gene_ENSMICG00000007546_transcript_ENSMICT00000007541_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.03150):0.01000):0.00350):0.00050):0.00150,
879_ICTTR_ENSSTOP00000016909_pep_novel_scaffold_spetri2_JH393300_1_12688606_12690484_1_gene_ENSSTOG00000014942_transcript_ENSSTOT00000019405_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.04700):0.00750,
264_DASNO_ENSDNOP00000011763_pep_novel_genescaffold_dasNov2_GeneScaffold_5676_89866_91274_-1_gene_ENSDNOG00000015177_transcript_ENSDNOT00000015174_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.05450):0.00400,(
319_PROCA_ENSPCAP00000011831_pep_novel_scaffold_proCap1_scaffold_16404_5466_7223_-1_gene_ENSPCAG00000012722_transcript_ENSPCAT00000012666_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.04650,
502_LOXAF_ENSLAFP00000016963_pep_novel_supercontig_loxAfr3_scaffold_31_19657029_19658963_1_gene_ENSLAFG00000011262_transcript_ENSLAFT00000011262_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.04650):0.01200):0.00050,
433_CAVPO_ENSCPOP00000012164_pep_known_scaffold_cavPor3_scaffold_53_8561947_8563624_1_gene_ENSCPOG00000013509_transcript_ENSCPOT00000013643_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.05900):0.00000,(
525_MUSMU_ENSMUSP00000056315_pep_known_chromosome_GRCm38_11_96194316_96197447_1_gene_ENSMUSG00000049604_transcript_ENSMUST00000062709_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.00400,
529_RATNO_ENSRNOP00000009934_pep_known_chromosome_RGSC3_4_10_84925520_84927793_1_gene_ENSRNOG00000007491_transcript_ENSRNOT00000009934_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.00400):0.05500):0.00650,
664_PTEVA_ENSPVAP00000014645_pep_novel_genescaffold_pteVam1_GeneScaffold_13_439992_441826_-1_gene_ENSPVAG00000015531_transcript_ENSPVAT00000015531_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.06550):0.01050,
629_TUPBE_ENSTBEP00000001928_pep_novel_genescaffold_TREESHREW_GeneScaffold_3587_128250_130388_-1_gene_ENSTBEG00000002229_transcript_ENSTBET00000002226_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.07600):0.00050,(
581_CANFA_ENSCAFP00000024813_pep_novel_chromosome_CanFam3_1_9_24959221_24961243_-1_gene_ENSCAFG00000016870_transcript_ENSCAFT00000026707_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.05850,
817_CANFA_ENSCAFP00000032374_pep_novel_chromosome_CanFam3_1_9_24958846_24961033_-1_gene_ENSCAFG00000016870_transcript_ENSCAFT00000036939_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.05850):0.01800):0.00200,
519_AILME_ENSAMEP00000005274_pep_novel_scaffold_ailMel1_GL192497_1_1974531_1976336_-1_gene_ENSAMEG00000004997_transcript_ENSAMET00000005493_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.07850):0.01650,
585_ERIEU_ENSEEUP00000003921_pep_novel_scaffold_HEDGEHOG_scaffold_340493_60031_61936_1_gene_ENSEEUG00000004337_transcript_ENSEEUT00000004313_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.09500):0.00850,(
473_SARHA_ENSSHAP00000015475_pep_novel_scaffold_DEVIL7_0_GL856828_1_1183928_1185840_-1_gene_ENSSHAG00000013189_transcript_ENSSHAT00000015602_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.02950,(
542_MONDO_ENSMODP00000015421_pep_novel_chromosome_BROADO5_2_201363754_201365724_-1_gene_ENSMODG00000012310_transcript_ENSMODT00000015707_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.01500,
547_MACEU_ENSMEUP00000002138_pep_novel_scaffold_Meug_1_0_Scaffold16180_14244_16371_-1_gene_ENSMEUG00000002348_transcript_ENSMEUT00000002347_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.01500):0.01450):0.07400):0.06300):0.01250,
89_gi_255742470_gb_ACU32582_1__homeobox_protein_HoxD13__Callorhinchus_milii_
:0.17900):0.00100,((((
555_gi_42491594_gb_AAS16938_1__Hoxc13b__Danio_rerio_
:0.00000,
557_gi_60392439_sp_Q6JIY4_1_HXCDB_DANRE_RecName__Full=Homeobox_protein_Hox-C13b
:0.00000):0.00000,
559_DANRE_ENSDARP00000109810_pep_known_chromosome_Zv9_11_2108753_2111963_1_gene_ENSDARG00000090023_transcript_ENSDART00000123944_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.00000):0.00000,
598_DANRE_ENSDARP00000104963_pep_known_chromosome_Zv9_11_2108784_2111361_1_gene_ENSDARG00000090023_transcript_ENSDART00000123475_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.00000):0.00450,(
596_gi_141795820_gb_AAI39598_1__Homeo_box_C13b__Danio_rerio_
:0.00000,
597_gi_145587653_ref_NP_571621_2__homeobox_protein_Hox-C13b__Danio_rerio_
:0.00000):0.00450):0.17550):0.00800,((((
312_gi_301612439_ref_XP_002935723_1__PREDICTED__homeobox_protein_Hox-D13-like__Xenopus__Silurana__tropicalis_
:0.00000,
313_XENTR_ENSXETP00000016487_pep_known_scaffold_JGI_4_2_GL172799_1_649598_652647_-1_gene_ENSXETG00000007575_transcript_ENSXETT00000016487_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.00000):0.03750,((
481_gi_27948458_gb_AAO25535_1__Hoxd13__Xenopus_laevis_
:0.00000,
483_gi_148237723_ref_NP_001083950_1__homeobox_D13__Xenopus_laevis_
:0.00000):0.00150,
556_gi_51513017_gb_AAH80434_1__Hoxd13_protein__Xenopus_laevis_
:0.00150):0.03600):0.03000,(((((((
486_gi_290760380_gb_ADD54556_1__HOXD13__Trachemys_scripta_
:0.00250,
716_gi_86355071_dbj_BAE78770_1__homeobox_protein_HoxD13__Pelodiscus_sinensis_
:0.00250):0.00400,
508_PELSI_ENSPSIP00000003274_pep_novel_scaffold_PelSin_1_0_JH207676_1_3316053_3320735_-1_gene_ENSPSIG00000003141_transcript_ENSPSIT00000003289_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.00650):0.00700,
745_MONDO_ENSMODP00000011934_pep_novel_chromosome_BROADO5_4_187431500_187433177_1_gene_ENSMODG00000009550_transcript_ENSMODT00000012158_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.01350):0.01550,
524_SARHA_ENSSHAP00000018750_pep_novel_scaffold_DEVIL7_0_GL849635_1_1958352_1960159_1_gene_ENSSHAG00000015915_transcript_ENSSHAT00000018905_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.02900):0.00000,
903_ORNAN_ENSOANP00000007506_pep_known_supercontig_OANA5_Contig13670_2_2722_1_gene_ENSOANG00000004742_transcript_ENSOANT00000007508_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.02900):0.00300,((((
659_BOSTA_ENSBTAP00000005651_pep_known_chromosome_UMD3_1_2_20854099_20856159_-1_gene_ENSBTAG00000004313_transcript_ENSBTAT00000005651_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.01700,(((((
698_PANTR_ENSPTRP00000021643_pep_known_chromosome_CHIMP2_1_4_2B_180568143_180571274_1_gene_ENSPTRG00000012664_transcript_ENSPTRT00000023465_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.00800,((((((((
773_CAVPO_ENSCPOP00000006057_pep_novel_scaffold_cavPor3_scaffold_3_14216723_14218530_-1_gene_ENSCPOG00000006722_transcript_ENSCPOT00000006791_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.00300,(((
815_SUSSC_ENSSSCP00000016931_pep_known_chromosome_Sscrofa10_2_15_91361475_91364735_1_gene_ENSSSCG00000015979_transcript_ENSSSCT00000017400_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.00000,
933_VICPA_ENSVPAP00000009487_pep_novel_genescaffold_vicPac1_GeneScaffold_1255_7800_9252_1_gene_ENSVPAG00000010195_transcript_ENSVPAT00000010195_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.00000):0.00000,
892_MICMU_ENSMICP00000001984_pep_novel_genescaffold_micMur1_GeneScaffold_2366_663890_665481_1_gene_ENSMICG00000002170_transcript_ENSMICT00000002167_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.00000):0.00250,
844_PTEVA_ENSPVAP00000016427_pep_novel_genescaffold_pteVam1_GeneScaffold_1976_163050_164759_1_gene_ENSPVAG00000017415_transcript_ENSPVAT00000017413_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.00250):0.00050):0.00000,(
835_RATNO_ENSRNOP00000002155_pep_known_chromosome_RGSC3_4_3_57283681_57286998_1_gene_ENSRNOG00000001588_transcript_ENSRNOT00000002155_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.00000,
836_MUSMU_ENSMUSP00000001872_pep_known_chromosome_GRCm38_2_74668310_74671599_1_gene_ENSMUSG00000001819_transcript_ENSMUST00000001872_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.00000):0.00300):0.00000,
875_TARSY_ENSTSYP00000003414_pep_novel_scaffold_tarSyr1_scaffold_9668_25162_26885_1_gene_ENSTSYG00000003737_transcript_ENSTSYT00000003727_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.00300):0.00000,
940_ICTTR_ENSSTOP00000003689_pep_novel_scaffold_spetri2_JH393319_1_5579846_5581651_1_gene_ENSSTOG00000004117_transcript_ENSSTOT00000004112_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.00300):0.00050,
974_MYOLU_ENSMLUP00000006393_pep_putative_scaffold_Myoluc2_0_GL429772_7120256_7121776_-1_gene_ENSMLUG00000006997_transcript_ENSMLUT00000006994_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.00350):0.00050,
799_NOMLE_ENSNLEP00000007263_pep_novel_supercontig_Nleu1_0_GL397263_1_19974851_19989702_1_gene_ENSNLEG00000006003_transcript_ENSNLET00000007622_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.00400):0.00000,
916_MACMU_ENSMMUP00000030937_pep_known_chromosome_MMUL_1_12_39733879_39735565_1_gene_ENSMMUG00000023500_transcript_ENSMMUT00000033061_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.00400):0.00150,(
796_PONAB_ENSPPYP00000014468_pep_known_chromosome_PPYG2_2b_66248372_66250489_1_gene_ENSPPYG00000012956_transcript_ENSPPYT00000015055_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.00450,((
811_HOMSA_ENSP00000376322_pep_known_chromosome_GRCh37_2_176957619_176960666_1_gene_ENSG00000128714_transcript_ENST00000392539_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.00000,
812_HOMSA_gi_116734702_ref_NP_000514_2__homeobox_protein_Hox-D13__Homo_sapiens_
:0.00000):0.00250,(
946_GORGO_ENSGGOP00000001322_pep_novel_chromosome_gorGor3_1_2b_64010266_64013161_1_gene_ENSGGOG00000001339_transcript_ENSGGOT00000001347_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.00000,
947_GORGO_ENSGGOP00000019022_pep_novel_chromosome_gorGor3_1_2b_64141704_64144599_-1_gene_ENSGGOG00000023186_transcript_ENSGGOT00000028651_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.00000):0.00250):0.00200):0.00100):0.00250):0.00200,
1000_CALJA_ENSCJAP00000015238_pep_known_chromosome_C_jacchus3_2_1_6_42242679_42245820_-1_gene_ENSCJAG00000008250_transcript_ENSCJAT00000016085_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.01000):0.00050,
999_CALJA_ENSCJAP00000015235_pep_novel_chromosome_C_jacchus3_2_1_6_42187672_42246677_-1_gene_ENSCJAG00000008250_transcript_ENSCJAT00000016083_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.01050):0.00150,
794_LOXAF_ENSLAFP00000019475_pep_novel_supercontig_loxAfr3_scaffold_3_51290483_51292296_-1_gene_ENSLAFG00000027629_transcript_ENSLAFT00000030368_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.01200):0.00000,
813_LOXAF_ENSLAFP00000018398_pep_novel_supercontig_loxAfr3_scaffold_3_51290486_51292296_-1_gene_ENSLAFG00000027629_transcript_ENSLAFT00000032596_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.01200):0.00500):0.00200,
863_OTOGA_ENSOGAP00000021899_pep_novel_scaffold_OtoGar3_GL873567_1_10265916_10268215_-1_gene_ENSOGAG00000027055_transcript_ENSOGAT00000031665_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.01900):0.00200,
962_CHOHO_ENSCHOP00000004252_pep_novel_scaffold_choHof1_scaffold_113557_5_1489_1_gene_ENSCHOG00000004807_transcript_ENSCHOT00000004819_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.02100):0.00900,
814_TURTR_ENSTTRP00000013062_pep_novel_genescaffold_turTru1_GeneScaffold_1722_434301_435597_1_gene_ENSTTRG00000013771_transcript_ENSTTRT00000013770_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.03000):0.00200):0.00150,((
647_gi_289813_gb_AAA48824_1__homeobox_protein_hoxd13__Gallus_gallus_
:0.00000,
649_gi_45382165_ref_NP_990765_1__homeobox_protein_Hox-D13__Gallus_gallus_
:0.00000):0.00000,
650_gi_1170443_sp_P24344_3_HXD13_CHICK_RecName__Full=Homeobox_protein_Hox-D13__AltName__Full=Homeobox_protein_Hox-4_8__Short=Chox-4_8__AltName__Full=Homeobox_protein_Hox-4G__Short=Chox-4G
:0.00000):0.03350):0.03400):0.08400,((
746_gi_290760375_gb_ADD54552_1__HOXD13__Gekko_ulikovskii_
:0.07700,
929_gi_290760370_gb_ADD54548_1__HOXD13__Anguis_fragilis_
:0.07700):0.07050,
996_gi_327283067_ref_XP_003226263_1__PREDICTED__homeobox_protein_Hox-D13-like__partial__Anolis_carolinensis_
:0.14750):0.00400):0.03650):0.00350,
589_gi_224055141_ref_XP_002196614_1__PREDICTED__homeobox_D13__Taeniopygia_guttata_
:0.19150):0.00600,(
731_GALGA_ENSGALP00000002343_pep_known_chromosome_WASHUC2_27_3518760_3520331_1_gene_ENSGALG00000001543_transcript_ENSGALT00000002345_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.00000,
780_gi_118102888_ref_XP_001234927_1__PREDICTED__homeobox_protein_Hox-B13a__Gallus_gallus_
:0.00000):0.19750):0.01350,
132_NOMLE_ENSNLEP00000021456_pep_novel_supercontig_Nleu1_0_GL397261_1_58496712_58533241_-1_gene_ENSNLEG00000017680_transcript_ENSNLET00000022545_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.21100):0.01200,
599_MYOLU_ENSMLUP00000017526_pep_putative_scaffold_Myoluc2_0_GL430021_1062476_1063886_-1_gene_ENSMLUG00000029480_transcript_ENSMLUT00000028295_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.22300):0.00000,
931_gi_397327520_gb_AFO42781_1__HOXD13__Polyodon_spathula_
:0.22300):0.01250,
762_gi_385654524_gb_AFI62018_1__Hox-D13a__Anguilla_japonica_
:0.23550):0.01000,
867_gi_11037554_gb_AAG27629_1_AF298184_1_homeodomain_protein_Hoxb13__Ambystoma_mexicanum_
:0.24550):0.03200,((
434_gi_157816005_gb_ABV82021_1__homeobox_protein_HoxD13aa__Salmo_salar_
:0.00000,
435_gi_158702363_gb_ABW77550_1__homeobox_protein_HoxD13aa__Salmo_salar_
:0.00000):0.00000,
438_gi_213512276_ref_NP_001133022_1__homeobox_protein_HoxD13aa__Salmo_salar_
:0.00000):0.27750):0.01100,((
595_gi_974817_emb_CAA61031_1__HoxD13__Danio_rerio_
:0.00850,
635_gi_157422860_gb_AAI53653_1__Hoxd13a_protein__Danio_rerio_
:0.00850):0.01000,((((((
675_gi_169154439_emb_CAQ15522_1__homeo_box_D13a__Danio_rerio_
:0.00000,
677_gi_61403377_gb_AAH91996_1__Homeo_box_D13a__Danio_rerio_
:0.00000):0.00000,
678_gi_182889642_gb_AAI65451_1__Hoxd13a_protein__Danio_rerio_
:0.00000):0.00000,
679_gi_190337759_gb_AAI63878_1__Homeo_box_D13a__Danio_rerio_
:0.00000):0.00000,
680_gi_115502403_sp_Q90472_2_HXDDA_DANRE_RecName__Full=Homeobox_protein_Hox-D13a__Short=Hox-D13
:0.00000):0.00000,
681_gi_65301428_ref_NP_571244_2__homeo_box_D13a__Danio_rerio_
:0.00000):0.00000,
682_DANRE_ENSDARP00000076768_pep_known_chromosome_Zv9_9_1977615_1981122_-1_gene_ENSDARG00000059256_transcript_ENSDART00000082332_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.00000):0.01850):0.27000):0.04050):0.00300):0.01650,(
257_gi_313220739_emb_CBY31581_1__unnamed_protein_product__Oikopleura_dioica_
:0.12650,((
282_gi_313226651_emb_CBY21796_1__unnamed_protein_product__Oikopleura_dioica_
:0.00000,
283_OIKDI_GSOIDT00011323001
:0.00000):0.00550,(
291_gi_172087376_ref_XP_001913230_1__HOX12__Oikopleura_dioica_
:0.00000,
292_gi_42601357_gb_AAS21383_1__HOX12__Oikopleura_dioica_
:0.00000):0.00550):0.12100):0.22200):0.00150):0.00100,
963_gi_217035837_gb_ACJ74390_1__Hox13__Branchiostoma_lanceolatum_
:0.35100):0.00700,((
271_gi_70569892_dbj_BAE06497_1__transcription_factor_protein__Ciona_intestinalis_
:0.00000,
272_gi_118343828_ref_NP_001071736_1__transcription_factor_protein__Ciona_intestinalis_
:0.00000):0.00000,
273_CIOIN_ENSCINP00000014451_pep_known_chromosome_KH_7_2706898_2709137_1_gene_ENSCING00000007040_transcript_ENSCINT00000014451_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.00000):0.35800):0.00200,(
462_gi_390357047_ref_XP_001195838_2__PREDICTED__homeobox_protein_Hox-A9-like__Strongylocentrotus_purpuratus_
:0.00000,
463_STRPU_gi_390357047_ref_XP_001195838_2__PREDICTED__homeobox_protein_Hox-A9-like__Strongylocentrotus_purpuratus_
:0.00000):0.36000):0.00200,(((((
905_gi_172087438_ref_XP_001913261_1__HOX11__Oikopleura_dioica_
:0.00000,
906_gi_42601388_gb_AAS21413_1__HOX11__Oikopleura_dioica_
:0.00000):0.00000,
907_gi_313239324_emb_CBY14270_1__unnamed_protein_product__Oikopleura_dioica_
:0.00000):0.00000,
908_OIKDI_GSOIDT00007256001
:0.00000):0.05200,
995_gi_313245942_emb_CBY34920_1__unnamed_protein_product__Oikopleura_dioica_
:0.05200):0.00550,
944_gi_313246681_emb_CBY35561_1__unnamed_protein_product__Oikopleura_dioica_
:0.05750):0.30450):0.00250,(
414_gi_187936705_dbj_BAG32150_1__putative_Hox13_homolog__Lethenteron_camtschaticum_
:0.15250,
606_PETMA_ENSPMAP00000000838_pep_putative_scaffold_Pmarinus_7_0_GL479015_64674_72230_1_gene_ENSPMAG00000000767_transcript_ENSPMAT00000000840_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.15250):0.21200):0.01900):0.00000,
367_gi_387598542_gb_AFJ91927_1__homeodomain_transcription_factor_Post2__Platynereis_dumerilii_
:0.38350):0.00600,
161_gi_13623807_dbj_BAB41078_1__Hox_class_homeodomain_protein_DjAbd-Bb__Dugesia_japonica_
:0.38950):0.01000,(((((
400_ORYLA_ENSORLP00000002444_pep_known_chromosome_MEDAKA1_10_7284975_7287373_1_gene_ENSORLG00000001963_transcript_ENSORLT00000002445_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.01100,(
411_ORYLA_ENSORLP00000002442_pep_known_chromosome_MEDAKA1_10_7284791_7287414_1_gene_ENSORLG00000001963_transcript_ENSORLT00000002443_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.00000,
446_ORYLA_ENSORLP00000002441_pep_known_chromosome_MEDAKA1_10_7284766_7287851_1_gene_ENSORLG00000001963_transcript_ENSORLT00000002442_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.00000):0.01100):0.00000,
413_ORYLA_ENSORLP00000002443_pep_known_chromosome_MEDAKA1_10_7284975_7287373_1_gene_ENSORLG00000001963_transcript_ENSORLT00000002444_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.01100):0.07650,(
667_gi_348515495_ref_XP_003445275_1__PREDICTED__homeobox_protein_CDX-4-like__Oreochromis_niloticus_
:0.00000,
707_ORENI_ENSONIP00000003532_pep_novel_scaffold_Orenil1_0_GL831169_1_4322924_4326145_1_gene_ENSONIG00000002817_transcript_ENSONIT00000003533_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.00000):0.08750):0.02400,
732_TAKRU_ENSTRUP00000028797_pep_novel_scaffold_FUGU4_scaffold_132_640538_643061_1_gene_ENSTRUG00000011401_transcript_ENSTRUT00000028913_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.11150):0.01900,((
722_gi_62510_emb_CAA47380_1__Zf-cad1_protein__Danio_rerio_
:0.00950,
759_DANRE_ENSDARP00000052708_pep_known_chromosome_Zv9_14_33817324_33820231_-1_gene_ENSDARG00000036292_transcript_ENSDART00000052709_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.00950):0.11250,((((((((
820_gi_169146089_emb_CAQ13437_1__caudal_type_homeo_box_transcription_factor_4__Danio_rerio_
:0.00000,
821_gi_158253566_gb_AAI54242_1__Cdx4_protein__Danio_rerio_
:0.00000):0.00000,
822_gi_169642536_gb_AAI60643_1__Cdx4_protein__Danio_rerio_
:0.00000):0.00000,
823_gi_170285089_gb_AAI60957_1__LOC100145392_protein__Xenopus__Silurana__tropicalis_
:0.00000):0.00000,
824_gi_319918830_ref_NP_571184_2__homeobox_protein_CDX-4__Danio_rerio_
:0.00000):0.00000,
825_gi_187607954_ref_NP_001120328_1__uncharacterized_protein_LOC100145392__Xenopus__Silurana__tropicalis_
:0.00000):0.00000,
827_DANRE_ENSDARP00000098008_pep_known_chromosome_Zv9_14_33816791_33820242_-1_gene_ENSDARG00000036292_transcript_ENSDART00000114973_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.00000):0.00000,
847_gi_49903787_gb_AAH76488_1__Cdx4_protein__Danio_rerio_
:0.00000):0.00000,
848_gi_197246985_gb_AAI64427_1__Cdx4_protein__Danio_rerio_
:0.00000):0.12200):0.00850):0.26900):0.00400,
645_HELRO_jgi_Helro1_110662
:0.40350):0.01600,((
250_RATNO_ENSRNOP00000003973_pep_known_chromosome_RGSC3_4_X_91285627_91294213_1_gene_ENSRNOG00000002974_transcript_ENSRNOT00000003973_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.04750,
938_MUSMU_ENSMUSP00000033689_pep_known_chromosome_GRCm38_X_103321398_103330592_1_gene_ENSMUSG00000031326_transcript_ENSMUST00000033689_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.04750):0.10900,(
548_BOSTA_ENSBTAP00000002260_pep_known_chromosome_UMD3_1_X_82550390_82559474_-1_gene_ENSBTAG00000001726_transcript_ENSBTAT00000002260_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.13750,(((
959_PONAB_ENSPPYP00000022919_pep_known_chromosome_PPYG2_X_70860233_70867569_1_gene_ENSPPYG00000020472_transcript_ENSPPYT00000023882_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.03750,(
987_HOMSA_ENSP00000362613_pep_known_chromosome_GRCh37_X_72667088_72675081_1_gene_ENSG00000131264_transcript_ENST00000373514_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.00000,
988_HOMSA_gi_4885127_ref_NP_005184_1__homeobox_protein_CDX-4__Homo_sapiens_
:0.00000):0.03750):0.00150,
960_PANTR_ENSPTRP00000037889_pep_known_chromosome_CHIMP2_1_4_X_73178199_73186076_1_gene_ENSPTRG00000022032_transcript_ENSPTRT00000041011_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.03900):0.07800,
998_CALJA_ENSCJAP00000020910_pep_known_scaffold_C_jacchus3_2_1_GL286110_1_14959_22457_1_gene_ENSCJAG00000011367_transcript_ENSCJAT00000022105_gene_biotype_protein_coding_transcript_biotype_protein_coding
:0.11700):0.02050):0.01900):0.26300):0.02400,
9_gi_187936707_dbj_BAG32151_1__Hox14_homolog__Lethenteron_camtschaticum_
:0.44350)