New!! (2012/Dec/17)
Result
Archaeopteryx home:
https://sites.google.com/site/cmzmasek/home/software/archaeopteryx
Archaeopteryx references:
Zmasek and Eddy (2001)
Han and Zmasek (2009)
Size = 36 sequences × 256 sites
Method = Neighbor-Joining
Model = JTT
Alpha = 0.49 (estimated)
Bootstrap resampling = 100
Alignment id = 13022811127487A1350cbJ67eRPFmtZYgL8
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How to convert the tree to printable format
- Download and open forester.jar, which starts the application version of Archaeopteryx.
- On the Archaeopteryx application, select File → Read Tree from URL/Webservice... to open a text field.
- Into the text field,
copy and paste the following URL:
http://mafft.cbrc.jp/alignment/server/spool/_nj13022811137618.xml
On Mac, use Command+c to copy and Ctrl+v to paste. - Select File → Export to PDF file... or File → Print... on the Archaeopteryx application.
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How are the sequences numbered in this tree?
Numbered according to the order of the sequences in the input data. Updated!! 2012/Dec/13 -
How reliable is this tree?
The Neighbor-Joining (NJ) method is very popular due to its good balance between accuracy and efficiency. If you are interested in outlining the phylogenetic relationship among your sequences, this tree will be useful. For more detailed analyses, also try likelihood-based and/or Bayesian methods. -
Is this a rooted tree?
No. You have to assume a rooting position, because it cannot be inferred. Click an appropriate node to be a root on the Archaeopteryx applet or application.