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Clustal format | Fasta format | MAFFT result | Jalview | Tree | Refine dataset New!
MAFFT command to build this tree
the sequence selection below and
removes redundant sequences. help : - Select / Unselect representative organisms: HOMSA MUSMU DANRE ORYLA XENTR selected / loaded / input ← Press this to load all input sequences. 0 / 1000 0 / 1000 1 query sequence - Australian lungfish HoxA14 +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 2 gi|365176835|emb|CBY85303.2| HoxA14 homolog [Neoceratodus forsteri] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 8 gi|328682777|gb|AEB33470.1| homeobox protein A14 [Protopterus annectens] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 3 gi|220898177|gb|ACL81433.1| HoxA14 [Latimeria menadoensis] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 4 LATCH|ENSLACP00000019837 pep:novel scaffold:LatCha1:JH126711.1:2100048:2107529:-1 gene:ENSLACG00000017442 transcript:ENSLACT00000019975 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 5 gi|255742469|gb|ACU32581.1| homeobox protein HoxD14 [Callorhinchus milii] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 6 gi|262263016|gb|ACY39976.1| HoxD14 [Heterodontus francisci] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 7 gi|301128894|emb|CBL59356.1| HoxD14 [Scyliorhinus canicula] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 10 gi|327263842|ref|XP_003216726.1| PREDICTED: LOW QUALITY PROTEIN: homeobox protein Hox-C12-like [Anolis carolinensis] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 233 gi|28372236|gb|AAO38042.1| HoxC12 [Latimeria menadoensis] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 11 gi|220898202|gb|ACL81456.1| HoxC12 [Latimeria menadoensis] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 12 LATCH|ENSLACP00000019048 pep:novel scaffold:LatCha1:JH126829.1:1722264:1724159:-1 gene:ENSLACG00000016761 transcript:ENSLACT00000019181 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 45 gi|363746859|ref|XP_426957.3| PREDICTED: homeobox protein Hox-C12 [Gallus gallus] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 79 PELSI|ENSPSIP00000005258 pep:novel scaffold:PelSin_1.0:JH210540.1:454500:456375:-1 gene:ENSPSIG00000004903 transcript:ENSPSIT00000005288 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 968 ANOCA|ENSACAP00000010624 pep:novel chromosome:AnoCar2.0:2:72133026:72133238:-1 gene:ENSACAG00000010840 transcript:ENSACAT00000010844 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 13 TURTR|ENSTTRP00000004275 pep:novel scaffold:turTru1:scaffold_105794:313661:315036:-1 gene:ENSTTRG00000004543 transcript:ENSTTRT00000004537 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 17 HOMSA|ENSP00000243103 pep:known chromosome:GRCh37:12:54348618:54352740:1 gene:ENSG00000123407 transcript:ENST00000243103 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 18 HOMSA|gi|27804315|ref|NP_776272.1| homeobox protein Hox-C12 [Homo sapiens] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 19 GORGO|ENSGGOP00000026612 pep:novel chromosome:gorGor3.1:12:52001222:52002833:1 gene:ENSGGOG00000023684 transcript:ENSGGOT00000022107 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 20 OTOGA|ENSOGAP00000018648 pep:novel scaffold:OtoGar3:GL873562.1:8041581:8043173:1 gene:ENSOGAG00000025383 transcript:ENSOGAT00000033778 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 22 PANTR|ENSPTRP00000008555 pep:known chromosome:CHIMP2.1.4:12:35294938:35296568:-1 gene:ENSPTRG00000005026 transcript:ENSPTRT00000009253 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 23 MACMU|ENSMMUP00000006041 pep:known chromosome:MMUL_1:11:51052937:51054565:1 gene:ENSMMUG00000004541 transcript:ENSMMUT00000006424 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 24 GORGO|ENSGGOP00000017338 pep:novel chromosome:gorGor3.1:12:52001222:52002833:1 gene:ENSGGOG00000023684 transcript:ENSGGOT00000030995 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 25 CALJA|ENSCJAP00000034933 pep:known chromosome:C_jacchus3.2.1:9:42874450:42876069:1 gene:ENSCJAG00000018806 transcript:ENSCJAT00000036888 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 36 PONAB|ENSPPYP00000005237 pep:known chromosome:PPYG2:12:53729442:53731065:1 gene:ENSPPYG00000004589 transcript:ENSPPYT00000005441 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 21 ORYCU|ENSOCUP00000001005 pep:novel chromosome:oryCun2:4:37739049:37740591:1 gene:ENSOCUG00000001157 transcript:ENSOCUT00000001157 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 26 NOMLE|ENSNLEP00000021457 pep:novel supercontig:Nleu1.0:GL397261.1:58515863:58517495:-1 gene:ENSNLEG00000017683 transcript:ENSNLET00000022547 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 27 MICMU|ENSMICP00000010649 pep:novel genescaffold:micMur1:GeneScaffold_1968:510286:511891:1 gene:ENSMICG00000011709 transcript:ENSMICT00000011699 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 28 BOSTA|ENSBTAP00000001223 pep:known chromosome:UMD3.1:5:26234886:26236477:-1 gene:ENSBTAG00000000924 transcript:ENSBTAT00000001223 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 29 SUSSC|ENSSSCP00000000297 pep:novel chromosome:Sscrofa10.2:5:19519313:19520932:-1 gene:ENSSSCG00000000281 transcript:ENSSSCT00000000302 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 30 CAVPO|ENSCPOP00000020832 pep:known scaffold:cavPor3:scaffold_9:45854322:45855870:-1 gene:ENSCPOG00000026314 transcript:ENSCPOT00000027677 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 31 AILME|ENSAMEP00000000691 pep:novel scaffold:ailMel1:GL193035.1:293337:294819:1 gene:ENSAMEG00000000665 transcript:ENSAMET00000000715 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 32 EQUCA|ENSECAP00000022437 pep:known chromosome:EquCab2:6:70819239:70820860:1 gene:ENSECAG00000024893 transcript:ENSECAT00000026847 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 33 LOXAF|ENSLAFP00000026579 pep:novel supercontig:loxAfr3:scaffold_2:40388131:40389754:1 gene:ENSLAFG00000024750 transcript:ENSLAFT00000027622 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 34 LOXAF|ENSLAFP00000022894 pep:novel supercontig:loxAfr3:scaffold_2:40388131:40389757:1 gene:ENSLAFG00000024750 transcript:ENSLAFT00000024765 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 35 ICTTR|ENSSTOP00000015013 pep:novel scaffold:spetri2:JH393322.1:11176743:11178360:1 gene:ENSSTOG00000019478 transcript:ENSSTOT00000020006 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 37 CANFA|ENSCAFP00000009931 pep:novel chromosome:CanFam3.1:27:1305773:1307350:-1 gene:ENSCAFG00000006645 transcript:ENSCAFT00000010710 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 38 MUSMU|ENSMUSP00000051003 pep:known chromosome:GRCm38:15:102936757:102938609:1 gene:ENSMUSG00000050328 transcript:ENSMUST00000055562 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 39 PTEVA|ENSPVAP00000011589 pep:novel genescaffold:pteVam1:GeneScaffold_1618:533420:534991:1 gene:ENSPVAG00000012297 transcript:ENSPVAT00000012296 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 40 RATNO|ENSRNOP00000021580 pep:known chromosome:RGSC3.4:7:141700558:141702156:1 gene:ENSRNOG00000016116 transcript:ENSRNOT00000021580 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 68 MYOLU|ENSMLUP00000017364 pep:putative scaffold:Myoluc2.0:GL429927:2406534:2408305:1 gene:ENSMLUG00000026984 transcript:ENSMLUT00000029327 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 84 MYOLU|ENSMLUP00000022488 pep:putative scaffold:Myoluc2.0:GL429927:2406534:2408305:1 gene:ENSMLUG00000026984 transcript:ENSMLUT00000023519 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 97 gi|24637176|gb|AAN63593.1|AF434200_1 transcription factor HoxC12 [Pleurodeles waltl] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 102 LOXAF|ENSLAFP00000028706 pep:novel supercontig:loxAfr3:scaffold_2:40388131:40389757:1 gene:ENSLAFG00000024750 transcript:ENSLAFT00000024462 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 366 ORNAN|ENSOANP00000023761 pep:known supercontig:OANA5:Contig22807:14595:14831:1 gene:ENSOANG00000015091 transcript:ENSOANT00000023765 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 55 gi|123295384|emb|CAM16422.1| novel protein similar to vertebrate homeo box C12 (HOXC12) [Danio rerio] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 56 gi|190339568|gb|AAI62849.1| Homeo box C12a [Danio rerio] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 57 gi|190339580|gb|AAI62872.1| Homeo box C12a [Danio rerio] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 58 gi|198282043|ref|NP_001104229.1| homeobox protein Hox-C12 [Danio rerio] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 59 DANRE|ENSDARP00000093921 pep:known chromosome:Zv9:23:36115143:36116726:1 gene:ENSDARG00000070352 transcript:ENSDART00000103147 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 82 gi|332692518|gb|AEE90194.1| Homeobox C12b [Anguilla anguilla] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 83 gi|385654511|gb|AFI62007.1| Hox-C12b [Anguilla japonica] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 46 gi|83016970|dbj|BAE53493.1| hoxC12a [Oryzias latipes] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 47 gi|74267573|dbj|BAE44285.1| hoxC12a [Oryzias latipes] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 48 ORYLA|ENSORLP00000009912 pep:known chromosome:MEDAKA1:7:12845772:12847612:1 gene:ENSORLG00000007902 transcript:ENSORLT00000009913 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 949 gi|62958693|gb|AAY23663.1| Hox protein [Oreochromis niloticus] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 51 gi|154183813|gb|ABS70754.1| Hoxc12a [Haplochromis burtoni] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 52 gi|348521430|ref|XP_003448229.1| PREDICTED: homeobox protein Hox-C12a-like [Oreochromis niloticus] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 53 ORENI|ENSONIP00000015409 pep:novel scaffold:Orenil1.0:GL831196.1:1733256:1749680:1 gene:ENSONIG00000012233 transcript:ENSONIT00000015422 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 72 gi|94482825|gb|ABF22441.1| homeobox protein HoxC12a [Takifugu rubripes] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 73 gi|119370796|sp|Q1KKV3.1|HXCCA_TAKRU RecName: Full=Homeobox protein Hox-C12a +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 74 TAKRU|ENSTRUP00000010151 pep:known scaffold:FUGU4:scaffold_66:183466:185171:-1 gene:ENSTRUG00000004280 transcript:ENSTRUT00000010207 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 98 TAKRU|ENSTRUP00000010152 pep:known scaffold:FUGU4:scaffold_66:183466:185171:-1 gene:ENSTRUG00000004280 transcript:ENSTRUT00000010208 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 85 TETNI|ENSTNIP00000004137 pep:novel chromosome:TETRAODON8:9:4199088:4200906:1 gene:ENSTNIG00000001773 transcript:ENSTNIT00000004271 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 91 gi|47228657|emb|CAG07389.1| unnamed protein product [Tetraodon nigroviridis] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 86 gi|157815970|gb|ABV82004.1| homeobox protein HoxC12ba [Salmo salar] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 87 gi|158702343|gb|ABW77532.1| homeobox protein HoxC12ba [Salmo salar] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 88 gi|213514950|ref|NP_001133010.1| homeobox protein HoxC12ba [Salmo salar] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 61 gi|385654500|gb|AFI61997.1| Hox-C12a [Anguilla japonica] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 274 gi|332692507|gb|AEE90184.1| Homeobox C12a [Anguilla anguilla] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 92 gi|157815988|gb|ABV82013.1| homeobox protein HoxC12bb [Salmo salar] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 93 gi|158702354|gb|ABW77542.1| homeobox protein HoxC12bb [Salmo salar] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 94 gi|213511178|ref|NP_001133016.1| homeobox protein HoxC12bb [Salmo salar] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 62 gi|301614390|ref|XP_002936693.1| PREDICTED: homeobox protein Hox-C12-like [Xenopus (Silurana) tropicalis] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 63 XENTR|ENSXETP00000050671 pep:known scaffold:JGI_4.2:GL172862.1:343006:344323:1 gene:ENSXETG00000023470 transcript:ENSXETT00000050671 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 64 gi|157815932|gb|ABV81985.1| homeobox protein HoxC12aa [Salmo salar] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 65 gi|158702323|gb|ABW77514.1| homeobox protein HoxC12aa [Salmo salar] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 66 gi|213514098|ref|NP_001135379.1| homeobox protein HoxC12aa [Salmo salar] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 75 gi|157815950|gb|ABV81994.1| homeobox protein HoxC12ab [Salmo salar] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 77 gi|158702331|gb|ABW77521.1| homeobox protein HoxC12ab [Salmo salar] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 78 gi|213513378|ref|NP_001135091.1| homeobox protein HoxC12ab [Salmo salar] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 388 gi|15029044|emb|CAC44976.1| homeobox protein Hox C12 [Xenopus laevis] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 314 gi|256010542|gb|ACU32571.2| homeobox protein HoxC12 [Callorhinchus milii] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 162 gi|4322088|gb|AAD15953.1| homeobox protein [Danio rerio] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 163 gi|18858841|ref|NP_571620.1| homeobox protein Hox-C12b [Danio rerio] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 164 gi|60392448|sp|Q9YGT0.1|HXCCB_DANRE RecName: Full=Homeobox protein Hox-C12b +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 172 DANRE|ENSDARP00000067695 pep:known chromosome:Zv9:11:2178785:2180948:-1 gene:ENSDARG00000046043 transcript:ENSDART00000067696 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 174 gi|154183853|gb|ABS70791.1| HoxD12a [Haplochromis burtoni] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 370 gi|348519663|ref|XP_003447349.1| PREDICTED: homeobox protein Hox-D12a-like [Oreochromis niloticus] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 371 ORENI|ENSONIP00000010832 pep:novel scaffold:Orenil1.0:GL831187.1:838848:841465:-1 gene:ENSONIG00000008617 transcript:ENSONIT00000010841 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 700 gi|220898214|gb|ACL81467.1| HoxD12 [Latimeria menadoensis] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 723 LATCH|ENSLACP00000010955 pep:novel scaffold:LatCha1:JH127184.1:437440:438573:-1 gene:ENSLACG00000009639 transcript:ENSLACT00000011036 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 909 gi|28629683|gb|AAO43047.1| HoxD12 [Latimeria menadoensis] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 285 gi|7271824|gb|AAF44636.1|AF224263_6 HoxD12 [Heterodontus francisci] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 286 gi|14916589|sp|Q9IA16.1|HXD12_HETFR RecName: Full=Homeobox protein Hox-D12 +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 436 gi|301128896|emb|CBL59358.1| HoxD12 [Scyliorhinus canicula] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 126 gi|74267587|dbj|BAE44292.1| hoxD12a [Oryzias latipes] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 127 gi|83016975|dbj|BAE53496.1| hoxD12a [Oryzias latipes] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 137 ORYLA|ENSORLP00000021938 pep:novel chromosome:MEDAKA1:21:24601819:24602905:1 gene:ENSORLG00000017536 transcript:ENSORLT00000021939 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 290 TETNI|ENSTNIP00000004141 pep:known chromosome:TETRAODON8:2:13444759:13445770:-1 gene:ENSTNIG00000001777 transcript:ENSTNIT00000004275 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 380 TAKRU|ENSTRUP00000044945 pep:novel scaffold:FUGU4:scaffold_100:371712:372790:-1 gene:ENSTRUG00000017534 transcript:ENSTRUT00000045097 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 405 gi|94482847|gb|ABF22462.1| homeobox protein HoxD12a [Takifugu rubripes] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 407 gi|119370806|sp|Q1KKT2.1|HXDCA_TAKRU RecName: Full=Homeobox protein Hox-D12a +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 296 NOMLE|ENSNLEP00000007268 pep:novel supercontig:Nleu1.0:GL397263.1:19995181:19996139:1 gene:ENSNLEG00000006006 transcript:ENSNLET00000007627 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 315 GORGO|ENSGGOP00000001324 pep:novel chromosome:gorGor3.1:2b:64017037:64017995:1 gene:ENSGGOG00000001340 transcript:ENSGGOT00000001349 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 316 GORGO|ENSGGOP00000027400 pep:novel chromosome:gorGor3.1:2b:64136870:64137828:-1 gene:ENSGGOG00000023318 transcript:ENSGGOT00000023743 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 317 HOMSA|ENSP00000385586 pep:known chromosome:GRCh37:2:176964458:176966408:1 gene:ENSG00000170178 transcript:ENST00000406506 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 318 HOMSA|gi|194353946|ref|NP_067016.3| homeobox protein Hox-D12 [Homo sapiens] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 327 PANTR|ENSPTRP00000060527 pep:known chromosome:CHIMP2.1.4:2B:180575161:180576119:1 gene:ENSPTRG00000012665 transcript:ENSPTRT00000063945 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 416 PONAB|ENSPPYP00000014469 pep:known chromosome:PPYG2:2b:66255732:66256690:1 gene:ENSPPYG00000012957 transcript:ENSPPYT00000015056 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 687 MACMU|ENSMMUP00000030938 pep:known chromosome:MMUL_1:12:39740821:39741779:1 gene:ENSMMUG00000023501 transcript:ENSMMUT00000033062 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 912 TARSY|ENSTSYP00000003420 pep:novel scaffold:tarSyr1:scaffold_9668:32532:33471:1 gene:ENSTSYG00000003740 transcript:ENSTSYT00000003732 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 442 ICTTR|ENSSTOP00000004407 pep:novel scaffold:spetri2:JH393319.1:5586772:5587730:1 gene:ENSSTOG00000004918 transcript:ENSSTOT00000004913 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 356 MICMU|ENSMICP00000001987 pep:novel genescaffold:micMur1:GeneScaffold_2366:670508:671467:1 gene:ENSMICG00000002172 transcript:ENSMICT00000002170 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 517 SUSSC|ENSSSCP00000016932 pep:known chromosome:Sscrofa10.2:15:91368386:91369348:1 gene:ENSSSCG00000015980 transcript:ENSSSCT00000017401 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 583 BOSTA|ENSBTAP00000005652 pep:known chromosome:UMD3.1:2:20848044:20849010:-1 gene:ENSBTAG00000004314 transcript:ENSBTAT00000005652 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 570 CANFA|ENSCAFP00000031334 pep:novel chromosome:CanFam3.1:36:19907442:19908408:1 gene:ENSCAFG00000013429 transcript:ENSCAFT00000021306 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 544 AILME|ENSAMEP00000001956 pep:novel scaffold:ailMel1:GL193992.1:240409:241369:-1 gene:ENSAMEG00000001858 transcript:ENSAMET00000002035 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 528 FELCA|ENSFCAP00000011972 pep:novel scaffold:CAT:scaffold_161252:133578:134540:1 gene:ENSFCAG00000012910 transcript:ENSFCAT00000012914 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 298 ORYCU|ENSOCUP00000002083 pep:novel chromosome:oryCun2:7:115660028:115660987:1 gene:ENSOCUG00000002412 transcript:ENSOCUT00000002409 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 973 TURTR|ENSTTRP00000013063 pep:novel genescaffold:turTru1:GeneScaffold_1722:441956:442918:1 gene:ENSTTRG00000013772 transcript:ENSTTRT00000013771 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 546 TUPBE|ENSTBEP00000009336 pep:novel genescaffold:TREESHREW:GeneScaffold_4569:75213:76471:1 gene:ENSTBEG00000010799 transcript:ENSTBET00000010795 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 702 LOXAF|ENSLAFP00000014670 pep:novel supercontig:loxAfr3:scaffold_3:51284496:51285456:-1 gene:ENSLAFG00000017497 transcript:ENSLAFT00000017494 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 458 RATNO|ENSRNOP00000002154 pep:known chromosome:RGSC3.4:3:57290419:57291383:1 gene:ENSRNOG00000001587 transcript:ENSRNOT00000002154 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 950 RATNO|ENSRNOP00000059759 pep:known chromosome:RGSC3.4:3:57290419:57291383:1 gene:ENSRNOG00000001587 transcript:ENSRNOT00000068636 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 939 MUSMU|ENSMUSP00000001878 pep:known chromosome:GRCm38:2:74674929:74677706:1 gene:ENSMUSG00000001823 transcript:ENSMUST00000001878 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 349 MYOLU|ENSMLUP00000006411 pep:putative scaffold:Myoluc2.0:GL429772:7113750:7114712:-1 gene:ENSMLUG00000007009 transcript:ENSMLUT00000007015 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 329 gi|385654534|gb|AFI62027.1| Hox-D12b [Anguilla japonica] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 365 gi|332692537|gb|AEE90211.1| Homeobox D12b [Anguilla anguilla] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 385 gi|290760381|gb|ADD54557.1| HOXD12 [Trachemys scripta] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 437 gi|326922699|ref|XP_003207584.1| PREDICTED: homeobox protein Hox-D12-like [Meleagris gallopavo] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 439 MELGA|ENSMGAP00000009991 pep:novel chromosome:UMD2:7:16895745:16896897:-1 gene:ENSMGAG00000009673 transcript:ENSMGAT00000010834 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 443 gi|312775|emb|CAA43974.1| Ghox 4.7 [Gallus gallus] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 444 gi|45382599|ref|NP_990580.1| homeobox protein Hox-D12 [Gallus gallus] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 445 gi|400023|sp|P24343.2|HXD12_CHICK RecName: Full=Homeobox protein Hox-D12; AltName: Full=Homeobox protein Hox-4.7; Short=Chox-4.7; Short=Ghox-4.7; AltName: Full=Homeobox protein Hox-4F; Short=Chox-4F +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 447 GALGA|ENSGALP00000015070 pep:known chromosome:WASHUC2:7:17431437:17433113:-1 gene:ENSGALG00000009274 transcript:ENSGALT00000015086 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 747 TAEGU|ENSTGUP00000009200 pep:novel chromosome:taeGut3.2.4:7:17031441:17032219:1 gene:ENSTGUG00000008938 transcript:ENSTGUT00000009299 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 471 PELSI|ENSPSIP00000003244 pep:novel scaffold:PelSin_1.0:JH207676.1:3311162:3312900:-1 gene:ENSPSIG00000003112 transcript:ENSPSIT00000003259 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 234 gi|397327513|gb|AFO42775.1| HOXD12 [Polyodon spathula] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 874 gi|255742471|gb|ACU32583.1| homeobox protein HoxD12 [Callorhinchus milii] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 100 MONDO|ENSMODP00000011939 pep:novel chromosome:BROADO5:4:187439427:187440517:1 gene:ENSMODG00000009555 transcript:ENSMODT00000012163 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 101 SARHA|ENSSHAP00000018789 pep:novel scaffold:DEVIL7.0:GL849635.1:1966314:1967406:1 gene:ENSSHAG00000015948 transcript:ENSSHAT00000018944 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 592 MONDO|ENSMODP00000035420 pep:novel chromosome:BROADO5:4:187439427:187440517:1 gene:ENSMODG00000009555 transcript:ENSMODT00000037006 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 229 ORNAN|ENSOANP00000007507 pep:known supercontig:OANA5:Contig13670:9763:11483:1 gene:ENSOANG00000004743 transcript:ENSOANT00000007509 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 236 ORNAN|ENSOANP00000007509 pep:known supercontig:OANA5:Contig13670:9763:11486:1 gene:ENSOANG00000004743 transcript:ENSOANT00000007511 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 295 ORNAN|ENSOANP00000007508 pep:known supercontig:OANA5:Contig13670:9763:11486:1 gene:ENSOANG00000004743 transcript:ENSOANT00000007510 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 14 gi|157816021|gb|ABV82029.1| homeobox protein HoxD12ab [Salmo salar] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 15 gi|158702374|gb|ABW77560.1| homeobox protein HoxD12ab [Salmo salar] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 16 gi|213513354|ref|NP_001133028.1| homeobox protein HoxD12ab [Salmo salar] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 41 gi|169154438|emb|CAQ15521.1| homeo box D12a [Danio rerio] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 42 gi|187608365|ref|NP_001119958.1| homeobox protein Hox-D12a [Danio rerio] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 43 DANRE|ENSDARP00000076775 pep:known chromosome:Zv9:9:1973132:1975379:-1 gene:ENSDARG00000059263 transcript:ENSDART00000082339 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 177 gi|115502402|sp|Q90471.2|HXDCA_DANRE RecName: Full=Homeobox protein Hox-D12a; Short=Hox-D12 +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 179 DANRE|ENSDARP00000121699 pep:known chromosome:Zv9:9:1972681:1976813:-1 gene:ENSDARG00000059263 transcript:ENSDART00000142842 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 252 gi|974815|emb|CAA61032.1| HoxD12 [Danio rerio] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 376 GADMO|ENSGMOP00000004568 pep:novel genescaffold:gadMor1:GeneScaffold_1009:402688:403708:-1 gene:ENSGMOG00000004313 transcript:ENSGMOT00000004706 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 141 gi|308324290|gb|ADO29280.1| homeobox protein hox-d12a [Ictalurus punctatus] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 142 gi|318037250|ref|NP_001187904.1| homeobox protein hox-d12a [Ictalurus punctatus] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 128 gi|157816007|gb|ABV82022.1| homeobox protein HoxD12aa [Salmo salar] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 129 gi|213512446|ref|NP_001133023.1| homeobox protein HoxD12aa [Salmo salar] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 841 gi|158702364|gb|ABW77551.1| homeobox protein HoxD12aa [Salmo salar] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 44 CIOSA|ENSCSAVP00000014842 pep:novel reftig:CSAV2.0:reftig_25:1527547:1529443:1 gene:ENSCSAVG00000008685 transcript:ENSCSAVT00000015015 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 49 gi|255755655|dbj|BAH96553.1| homeodomain transcription factor [Balanoglossus simodensis] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 54 gi|38016611|gb|AAR07639.1| transcription factor Hox11/13a [Ptychodera flava] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 70 gi|116574508|gb|ABK00022.1| hox 11/13a [Saccoglossus kowalevskii] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 71 gi|259013412|ref|NP_001158413.1| homeobox 11/13a [Saccoglossus kowalevskii] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 50 gi|397327510|gb|AFO42772.1| HOXD11 [Polyodon spathula] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 108 MONDO|ENSMODP00000011952 pep:novel chromosome:BROADO5:4:187447938:187449662:1 gene:ENSMODG00000009565 transcript:ENSMODT00000012176 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 158 CAVPO|ENSCPOP00000015198 pep:novel scaffold:cavPor3:scaffold_3:14202320:14204146:-1 gene:ENSCPOG00000019766 transcript:ENSCPOT00000021661 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 937 EQUCA|ENSECAP00000002054 pep:known chromosome:EquCab2:18:54568575:54568919:1 gene:ENSECAG00000003045 transcript:ENSECAT00000002868 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 192 CANFA|ENSCAFP00000019793 pep:novel chromosome:CanFam3.1:36:19914988:19916766:1 gene:ENSCAFG00000013436 transcript:ENSCAFT00000021317 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 194 HOMSA|ENSP00000249504 pep:known chromosome:GRCh37:2:176972014:176974722:1 gene:ENSG00000128713 transcript:ENST00000249504 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 195 HOMSA|gi|23510368|ref|NP_067015.2| homeobox protein Hox-D11 [Homo sapiens] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 201 PANTR|ENSPTRP00000057136 pep:known chromosome:CHIMP2.1.4:2B:180582709:180585092:1 gene:ENSPTRG00000012666 transcript:ENSPTRT00000065571 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 215 ORYCU|ENSOCUP00000011980 pep:novel chromosome:oryCun2:7:115667492:115669256:1 gene:ENSOCUG00000013942 transcript:ENSOCUT00000013936 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 238 ORYCU|ENSOCUP00000023411 pep:novel chromosome:oryCun2:7:115667441:115669259:1 gene:ENSOCUG00000013942 transcript:ENSOCUT00000024965 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 256 PANTR|ENSPTRP00000059068 pep:known chromosome:CHIMP2.1.4:2B:180582748:180584926:1 gene:ENSPTRG00000012666 transcript:ENSPTRT00000067481 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 451 PONAB|ENSPPYP00000014466 pep:novel chromosome:PPYG2:2b:66234263:66265342:1 gene:ENSPPYG00000012954 transcript:ENSPPYT00000015053 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 641 NOMLE|ENSNLEP00000007270 pep:novel supercontig:Nleu1.0:GL397263.1:20005998:20007834:1 gene:ENSNLEG00000006009 transcript:ENSNLET00000007629 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 173 OTOGA|ENSOGAP00000016347 pep:novel scaffold:OtoGar3:GL873567.1:10251643:10253411:-1 gene:ENSOGAG00000029520 transcript:ENSOGAT00000027188 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 225 MYOLU|ENSMLUP00000006426 pep:putative scaffold:Myoluc2.0:GL429772:7105422:7107292:-1 gene:ENSMLUG00000007030 transcript:ENSMLUT00000007032 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 140 MICMU|ENSMICP00000001998 pep:novel genescaffold:micMur1:GeneScaffold_2366:677963:679806:1 gene:ENSMICG00000002175 transcript:ENSMICT00000002183 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 165 BOSTA|ENSBTAP00000051665 pep:known chromosome:UMD3.1:2:20839236:20841537:-1 gene:ENSBTAG00000033330 transcript:ENSBTAT00000054133 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 193 MUSMU|ENSMUSP00000122582 pep:known chromosome:GRCm38:2:74681999:74684609:1 gene:ENSMUSG00000042499 transcript:ENSMUST00000142312 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 220 AILME|ENSAMEP00000001948 pep:novel scaffold:ailMel1:GL193992.1:232310:234124:-1 gene:ENSAMEG00000001856 transcript:ENSAMET00000002027 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 284 SARHA|ENSSHAP00000018825 pep:novel scaffold:DEVIL7.0:GL849635.1:1974619:1975770:1 gene:ENSSHAG00000015976 transcript:ENSSHAT00000018980 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 593 ECHTE|ENSETEP00000008973 pep:novel genescaffold:TENREC:GeneScaffold_3295:59912:61296:1 gene:ENSETEG00000011066 transcript:ENSETET00000011066 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 159 gi|290760382|gb|ADD54558.1| HOXD11 [Trachemys scripta] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 184 gi|290760372|gb|ADD54550.1| HOXD11 [Anguis fragilis] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 714 PTEVA|ENSPVAP00000016429 pep:novel genescaffold:pteVam1:GeneScaffold_1976:177815:179967:1 gene:ENSPVAG00000017417 transcript:ENSPVAT00000017415 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 223 gi|327283063|ref|XP_003226261.1| PREDICTED: homeobox protein Hox-D10-like [Anolis carolinensis] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 942 ANOCA|ENSACAP00000007113 pep:novel scaffold:AnoCar2.0:GL343356.1:556826:557062:-1 gene:ENSACAG00000007282 transcript:ENSACAT00000007266 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 263 gi|325260878|gb|ADZ04667.1| homeobox D11 [Notophthalmus viridescens] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 297 gi|400022|sp|P31263.1|HXD11_NOTVI RecName: Full=Homeobox protein Hox-D11; AltName: Full=NvHox-2 +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 239 gi|326922697|ref|XP_003207583.1| PREDICTED: homeobox protein Hox-D11-like [Meleagris gallopavo] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 240 MELGA|ENSMGAP00000009981 pep:novel chromosome:UMD2:7:16890621:16892180:-1 gene:ENSMGAG00000009660 transcript:ENSMGAT00000010824 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 670 GALGA|ENSGALP00000015069 pep:known chromosome:WASHUC2:7:17425085:17426017:-1 gene:ENSGALG00000009273 transcript:ENSGALT00000015085 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 244 gi|211937|gb|AAA48822.1| homeodomain-containing protein [Gallus gallus] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 245 gi|45382913|ref|NP_989951.1| homeobox protein Hox-D11 [Gallus gallus] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 246 gi|400020|sp|P24342.2|HXD11_CHICK RecName: Full=Homeobox protein Hox-D11; AltName: Full=Homeobox protein Hox-4.6; Short=Chox-4.6; Short=Ghox-4.6; AltName: Full=Homeobox protein Hox-4E; Short=Chox-4E +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 269 PELSI|ENSPSIP00000003226 pep:novel scaffold:PelSin_1.0:JH207676.1:3303567:3305157:-1 gene:ENSPSIG00000003098 transcript:ENSPSIT00000003241 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 513 gi|222805|dbj|BAA01133.1| homeodomain protein [Gallus gallus] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 260 gi|310656722|gb|ADP02163.1| Hoxd11 [Typhlonectes natans] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 301 gi|290760387|gb|ADD54562.1| HOXD11 [Sphenodon punctatus] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 625 gi|3551785|gb|AAC34744.1| homeobox transcription factor [Ambystoma mexicanum] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 241 TAEGU|ENSTGUP00000009203 pep:novel chromosome:taeGut3.2.4:7:17038300:17039721:1 gene:ENSTGUG00000008941 transcript:ENSTGUT00000009302 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 276 gi|224055144|ref|XP_002196688.1| PREDICTED: homeobox D11 [Taeniopygia guttata] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 143 TAKRU|ENSTRUP00000044930 pep:known scaffold:FUGU4:scaffold_100:366028:367381:-1 gene:ENSTRUG00000017526 transcript:ENSTRUT00000045082 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 389 gi|94482848|gb|ABF22463.1| homeobox protein HoxD11a [Takifugu rubripes] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 390 gi|119370804|sp|Q1KKT1.1|HXDBA_TAKRU RecName: Full=Homeobox protein Hox-D11a +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 344 TAKRU|ENSTRUP00000044929 pep:known scaffold:FUGU4:scaffold_100:366028:367390:-1 gene:ENSTRUG00000017526 transcript:ENSTRUT00000045081 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 242 TAKRU|ENSTRUP00000044927 pep:known scaffold:FUGU4:scaffold_100:361349:367381:-1 gene:ENSTRUG00000017526 transcript:ENSTRUT00000045079 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 202 gi|154183854|gb|ABS70792.1| Hoxd11a [Haplochromis burtoni] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 410 ORENI|ENSONIP00000010831 pep:novel scaffold:Orenil1.0:GL831187.1:831310:835681:-1 gene:ENSONIG00000008616 transcript:ENSONIT00000010840 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 712 LATCH|ENSLACP00000010850 pep:novel scaffold:LatCha1:JH127184.1:429699:431170:-1 gene:ENSLACG00000009551 transcript:ENSLACT00000010930 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 719 gi|220898213|gb|ACL81466.1| HoxD11 [Latimeria menadoensis] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 862 gi|28629685|gb|AAO43048.1| HoxD11 [Latimeria menadoensis] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 224 gi|332692538|gb|AEE90212.1| Homeobox D11b [Anguilla anguilla] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 226 gi|385654535|gb|AFI62028.1| Hox-D11b [Anguilla japonica] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 450 GASAC|ENSGACP00000006030 pep:novel group:BROADS1:groupXVI:9822565:9824027:-1 gene:ENSGACG00000004569 transcript:ENSGACT00000006047 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 510 TAKRU|ENSTRUP00000044931 pep:known scaffold:FUGU4:scaffold_100:366028:367345:-1 gene:ENSTRUG00000017526 transcript:ENSTRUT00000045083 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 358 gi|157816009|gb|ABV82023.1| homeobox protein HoxD11aa [Salmo salar] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 360 gi|158702365|gb|ABW77552.1| homeobox protein HoxD11aa [Salmo salar] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 361 gi|213512638|ref|NP_001133024.1| homeobox protein HoxD11aa [Salmo salar] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 673 TETNI|ENSTNIP00000004140 pep:novel chromosome:TETRAODON8:2:13439364:13440725:-1 gene:ENSTNIG00000001776 transcript:ENSTNIT00000004274 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 694 TETNI|ENSTNIP00000020078 pep:novel chromosome:TETRAODON8:2:13439364:13440761:-1 gene:ENSTNIG00000001776 transcript:ENSTNIT00000020309 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 590 GADMO|ENSGMOP00000004554 pep:novel genescaffold:gadMor1:GeneScaffold_1009:394972:397593:-1 gene:ENSGMOG00000004301 transcript:ENSGMOT00000004691 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 624 XENTR|ENSXETP00000058465 pep:known scaffold:JGI_4.2:GL172799.1:633878:635453:-1 gene:ENSXETG00000032416 transcript:ENSXETT00000060673 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 638 gi|301612437|ref|XP_002935722.1| PREDICTED: homeobox protein Hox-D11-like [Xenopus (Silurana) tropicalis] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 648 gi|92096053|gb|AAI15002.1| MGC131014 protein [Xenopus laevis] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 651 gi|147904190|ref|NP_001089966.1| homeobox D11 [Xenopus laevis] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 551 gi|290760360|gb|ADD54541.1| HOXD11 [Pantherophis guttatus] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 492 gi|397327519|gb|AFO42780.1| HOXD11 [Polyodon spathula] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 323 gi|255742457|gb|ACU32570.1| homeobox protein HoxC11 [Callorhinchus milii] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 511 CALMI|C.milii-RM-TrainedAugustus|20326|AAVX01043355.1;g20326.t1 +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 532 gi|169154437|emb|CAQ15520.1| homeo box D11a [Danio rerio] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 534 gi|229577319|ref|NP_571242.1| homeobox protein Hox-D11a [Danio rerio] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 535 gi|115502401|sp|Q90470.2|HXDBA_DANRE RecName: Full=Homeobox protein Hox-D11a; Short=Hox-D11; AltName: Full=Homeobox protein Hox-C11 +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 537 DANRE|ENSDARP00000076780 pep:known chromosome:Zv9:9:1966617:1968889:-1 gene:ENSDARG00000059267 transcript:ENSDART00000082344 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 575 gi|89130748|gb|AAI14272.1| Hoxd11a protein, partial [Danio rerio] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 630 gi|974813|emb|CAA61030.1| HoxD11 [Danio rerio] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 99 gi|385654526|gb|AFI62020.1| Hox-D11a [Anguilla japonica] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 623 gi|332692529|gb|AEE90204.1| Homeobox D11a [Anguilla anguilla] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 470 gi|327263951|ref|XP_003216780.1| PREDICTED: hypothetical protein LOC100552181 [Anolis carolinensis] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 577 ANOCA|ENSACAP00000010636 pep:novel chromosome:AnoCar2.0:2:72099112:72102084:-1 gene:ENSACAG00000010848 transcript:ENSACAT00000010856 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 561 gi|157815990|gb|ABV82014.1| homeobox protein HoxC11bb [Salmo salar] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 562 gi|158702344|gb|ABW77533.1| homeobox protein HoxC11ba [Salmo salar] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 563 gi|157815972|gb|ABV82005.1| homeobox protein HoxC11ba [Salmo salar] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 565 gi|213511378|ref|NP_001133017.1| homeobox protein HoxC11bb [Salmo salar] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 608 gi|158702355|gb|ABW77543.1| homeobox protein HoxC11bb [Salmo salar] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 512 TAKRU|ENSTRUP00000039169 pep:known scaffold:FUGU4:scaffold_48:1078629:1080381:-1 gene:ENSTRUG00000015327 transcript:ENSTRUT00000039310 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 533 gi|94482780|gb|ABF22399.1| homeobox protein HoxA11b [Takifugu rubripes] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 536 gi|119370779|sp|Q1KKZ5.1|HXABB_TAKRU RecName: Full=Homeobox protein Hox-A11b +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 545 TAKRU|ENSTRUP00000039170 pep:known scaffold:FUGU4:scaffold_48:1078629:1080381:-1 gene:ENSTRUG00000015327 transcript:ENSTRUT00000039311 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 584 TAKRU|ENSTRUP00000039167 pep:known scaffold:FUGU4:scaffold_48:1066189:1080375:-1 gene:ENSTRUG00000015327 transcript:ENSTRUT00000039308 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 935 gi|47225514|emb|CAG11997.1| unnamed protein product [Tetraodon nigroviridis] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 967 TETNI|ENSTNIP00000003617 pep:known chromosome:TETRAODON8:8:6789829:6791597:1 gene:ENSTNIG00000000494 transcript:ENSTNIT00000003930 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 247 PONAB|ENSPPYP00000005238 pep:novel chromosome:PPYG2:12:53747950:53750119:1 gene:ENSPPYG00000004590 transcript:ENSPPYT00000005442 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 275 PANTR|ENSPTRP00000008556 pep:known chromosome:CHIMP2.1.4:12:35274190:35277492:-1 gene:ENSPTRG00000005027 transcript:ENSPTRT00000009254 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 287 HOMSA|ENSP00000446680 pep:known chromosome:GRCh37:12:54366910:54371427:1 gene:ENSG00000123388 transcript:ENST00000546378 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 288 HOMSA|gi|7657166|ref|NP_055027.1| homeobox protein Hox-C11 [Homo sapiens] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 748 MICMU|ENSMICP00000010652 pep:novel genescaffold:micMur1:GeneScaffold_1968:528653:530832:1 gene:ENSMICG00000011710 transcript:ENSMICT00000011703 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 777 CALJA|ENSCJAP00000034939 pep:known chromosome:C_jacchus3.2.1:9:42892917:42896224:1 gene:ENSCJAG00000018808 transcript:ENSCJAT00000036895 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 504 ICTTR|ENSSTOP00000019763 pep:novel scaffold:spetri2:JH393322.1:11194935:11197220:1 gene:ENSSTOG00000028958 transcript:ENSSTOT00000027675 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 783 RATNO|ENSRNOP00000021589 pep:known chromosome:RGSC3.4:7:141717910:141720096:1 gene:ENSRNOG00000016141 transcript:ENSRNOT00000021589 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 785 MUSMU|ENSMUSP00000001701 pep:known chromosome:GRCm38:15:102954427:102957708:1 gene:ENSMUSG00000001656 transcript:ENSMUST00000001701 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 505 DIPOR|ENSDORP00000006553 pep:novel genescaffold:dipOrd1:GeneScaffold_2370:59812:62458:1 gene:ENSDORG00000006990 transcript:ENSDORT00000006990 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 459 CAVPO|ENSCPOP00000008475 pep:known scaffold:cavPor3:scaffold_9:45835708:45837891:-1 gene:ENSCPOG00000009441 transcript:ENSCPOT00000009526 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 729 MACMU|ENSMMUP00000001240 pep:known chromosome:MMUL_1:11:51071215:51074516:1 gene:ENSMMUG00000000924 transcript:ENSMMUT00000001320 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 829 BOSTA|ENSBTAP00000009028 pep:known chromosome:UMD3.1:5:26215737:26218209:-1 gene:ENSBTAG00000006879 transcript:ENSBTAT00000009028 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 786 EQUCA|ENSECAP00000022442 pep:known chromosome:EquCab2:6:70837383:70840203:1 gene:ENSECAG00000024900 transcript:ENSECAT00000026853 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 788 AILME|ENSAMEP00000000697 pep:novel scaffold:ailMel1:GL193035.1:311252:313250:1 gene:ENSAMEG00000000668 transcript:ENSAMET00000000721 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 805 PTEVA|ENSPVAP00000011590 pep:novel genescaffold:pteVam1:GeneScaffold_1618:553454:555647:1 gene:ENSPVAG00000012298 transcript:ENSPVAT00000012297 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 873 LOXAF|ENSLAFP00000015195 pep:novel supercontig:loxAfr3:scaffold_2:40406425:40408574:1 gene:ENSLAFG00000018133 transcript:ENSLAFT00000018132 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 787 CANFA|ENSCAFP00000009922 pep:novel chromosome:CanFam3.1:27:1287380:1289372:-1 gene:ENSCAFG00000025599 transcript:ENSCAFT00000010701 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 686 MYOLU|ENSMLUP00000000423 pep:putative scaffold:Myoluc2.0:GL429927:2424666:2427147:1 gene:ENSMLUG00000000470 transcript:ENSMLUT00000000466 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 774 ORYCU|ENSOCUP00000002809 pep:novel chromosome:oryCun2:4:37757375:37759724:1 gene:ENSOCUG00000001159 transcript:ENSOCUT00000003235 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 845 ORYCU|ENSOCUP00000001006 pep:novel chromosome:oryCun2:4:37757375:37759727:1 gene:ENSOCUG00000001159 transcript:ENSOCUT00000001158 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 688 ECHTE|ENSETEP00000013426 pep:novel scaffold:TENREC:scaffold_314778:57659:59897:1 gene:ENSETEG00000016549 transcript:ENSETET00000016548 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 377 gi|94482826|gb|ABF22442.1| homeobox protein HoxC11a [Takifugu rubripes] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 379 gi|119370795|sp|Q1KKV2.1|HXCBA_TAKRU RecName: Full=Homeobox protein Hox-C11a +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 395 TAKRU|ENSTRUP00000009759 pep:known scaffold:FUGU4:scaffold_66:171694:173892:-1 gene:ENSTRUG00000004120 transcript:ENSTRUT00000009814 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 415 TETNI|ENSTNIP00000004136 pep:novel chromosome:TETRAODON8:9:4211449:4213611:1 gene:ENSTNIG00000001772 transcript:ENSTNIT00000004270 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 600 gi|348521432|ref|XP_003448230.1| PREDICTED: homeobox protein Hox-C11a-like isoform 1 [Oreochromis niloticus] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 602 ORENI|ENSONIP00000015411 pep:novel scaffold:Orenil1.0:GL831196.1:1746387:1748892:1 gene:ENSONIG00000012235 transcript:ENSONIT00000015424 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 611 gi|154183814|gb|ABS70755.1| Hoxc11a [Haplochromis burtoni] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 684 GASAC|ENSGACP00000012382 pep:novel group:BROADS1:groupXII:11597219:11599475:1 gene:ENSGACG00000009392 transcript:ENSGACT00000012406 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 631 ORYLA|ENSORLP00000009920 pep:known chromosome:MEDAKA1:7:12857047:12859813:1 gene:ENSORLG00000007909 transcript:ENSORLT00000009921 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 765 gi|83016969|dbj|BAE53492.1| hoxC11a [Oryzias latipes] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 766 gi|74267571|dbj|BAE44284.1| hoxC11a [Oryzias latipes] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 526 gi|220898175|gb|ACL81431.1| HoxA11 [Latimeria menadoensis] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 558 XENTR|ENSXETP00000050673 pep:known scaffold:JGI_4.2:GL172862.1:362368:364631:1 gene:ENSXETG00000023471 transcript:ENSXETT00000050673 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 574 gi|301614392|ref|XP_002936692.1| PREDICTED: homeobox protein Hox-C11a-like [Xenopus (Silurana) tropicalis] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 617 gi|61402494|gb|AAH91858.1| Homeo box C11a [Danio rerio] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 618 gi|182889182|gb|AAI64748.1| Hoxc11a protein [Danio rerio] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 619 gi|82230194|sp|Q58EL0.1|HXCBA_DANRE RecName: Full=Homeobox protein Hox-C11a +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 620 gi|65301418|ref|NP_571240.1| homeobox protein Hox-C11a [Danio rerio] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 621 DANRE|ENSDARP00000093920 pep:known chromosome:Zv9:23:36126424:36129303:1 gene:ENSDARG00000070351 transcript:ENSDART00000103146 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 639 GADMO|ENSGMOP00000019199 pep:novel genescaffold:gadMor1:GeneScaffold_1797:103671:106392:1 gene:ENSGMOG00000017869 transcript:ENSGMOT00000019663 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 660 gi|220898201|gb|ACL81455.1| HoxC11 [Latimeria menadoensis] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 662 LATCH|ENSLACP00000019003 pep:novel scaffold:LatCha1:JH126829.1:1700689:1702658:-1 gene:ENSLACG00000016719 transcript:ENSLACT00000019136 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 727 PELSI|ENSPSIP00000005191 pep:novel scaffold:PelSin_1.0:JH210540.1:434065:438058:-1 gene:ENSPSIG00000004848 transcript:ENSPSIT00000005221 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 743 gi|118109696|ref|XP_428250.2| PREDICTED: homeobox protein Hox-C11a [Gallus gallus] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 744 GALGA|ENSGALP00000022325 pep:known chromosome:WASHUC2:Un_random:11038119:11040351:-1 gene:ENSGALG00000014091 transcript:ENSGALT00000022365 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 768 gi|325260870|gb|ADZ04660.1| homeobox C11 [Notophthalmus viridescens] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 870 MACEU|ENSMEUP00000008612 pep:novel scaffold:Meug_1.0:Scaffold28616:8554:10836:-1 gene:ENSMEUG00000009443 transcript:ENSMEUT00000009465 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 924 SARHA|ENSSHAP00000007386 pep:novel scaffold:DEVIL7.0:GL861729.1:228552:233448:1 gene:ENSSHAG00000006420 transcript:ENSSHAT00000007448 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 206 gi|255742472|gb|ACU32584.1| homeobox protein HoxD11 [Callorhinchus milii] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 495 gi|157815934|gb|ABV81986.1| homeobox protein HoxC11aa [Salmo salar] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 496 gi|158702324|gb|ABW77515.1| homeobox protein HoxC11aa [Salmo salar] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 500 gi|213512733|ref|NP_001132997.1| homeobox protein HoxC11aa [Salmo salar] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 913 gi|332692508|gb|AEE90185.1| Homeobox C11a [Anguilla anguilla] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 914 gi|385654501|gb|AFI61998.1| Hox-C11a [Anguilla japonica] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 253 gi|7271823|gb|AAF44635.1|AF224263_5 HoxD11 [Heterodontus francisci] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 254 gi|14916588|sp|Q9IA15.1|HXD11_HETFR RecName: Full=Homeobox protein Hox-D11 +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 294 gi|301128897|emb|CBL59359.1| HoxD11 [Scyliorhinus canicula] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 692 gi|332692519|gb|AEE90195.1| Homeobox C11b [Anguilla anguilla] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 693 gi|385654512|gb|AFI62008.1| Hox-C11b [Anguilla japonica] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 412 gi|158702234|gb|ABW77448.1| homeobox protein HoxA11ab [Salmo salar] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 440 gi|157816055|gb|ABV82046.1| homeobox protein HoxA11ab [Salmo salar] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 441 gi|213515130|ref|NP_001133037.1| homeobox protein HoxA11ab [Salmo salar] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 531 gi|158702214|gb|ABW77438.1| homeobox protein HoxA11aa [Salmo salar] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 573 gi|157816035|gb|ABV82036.1| homeobox protein HoxA11aa [Salmo salar] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 576 gi|213514000|ref|NP_001133032.1| homeobox protein HoxA11aa [Salmo salar] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 464 gi|332692476|gb|AEE90157.1| Homeobox A11b [Anguilla anguilla] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 490 gi|385654467|gb|AFI61969.1| Hox-A11b [Anguilla japonica] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 612 gi|255742430|gb|ACU32545.1| homeobox protein HoxA11 [Callorhinchus milii] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 632 gi|254212172|gb|ACT65747.1| Hoxa11 [Leucoraja erinacea] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 665 gi|22297529|gb|AAM18672.2|AF479755_2 homeobox A11 [Heterodontus francisci] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 666 gi|301128870|emb|CBL59334.1| HoxA11 [Scyliorhinus canicula] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 527 gi|400180321|gb|AFP73289.1| Hoxa11alpha [Polyodon spathula] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 554 gi|400180334|gb|AFP73301.1| Hoxa11beta [Polyodon spathula] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 391 gi|158702252|gb|ABW77457.1| homeobox protein HoxA11b [Salmo salar] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 396 gi|157816073|gb|ABV82055.1| homeobox protein HoxA11b [Salmo salar] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 397 gi|213511828|ref|NP_001135144.1| homeobox protein Hox-A11b [Salmo salar] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 749 ICTTR|ENSSTOP00000015737 pep:novel scaffold:spetri2:JH393288.1:3810469:3812971:-1 gene:ENSSTOG00000022674 transcript:ENSSTOT00000028863 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 778 BOSTA|ENSBTAP00000019611 pep:known chromosome:UMD3.1:4:69311987:69314613:1 gene:ENSBTAG00000014738 transcript:ENSBTAT00000019611 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 789 SUSSC|ENSSSCP00000017688 pep:known chromosome:Sscrofa10.2:18:50021760:50025397:1 gene:ENSSSCG00000016698 transcript:ENSSSCT00000018179 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 828 RATNO|ENSRNOP00000010256 pep:known chromosome:RGSC3.4:4:80542417:80546079:-1 gene:ENSRNOG00000007627 transcript:ENSRNOT00000010256 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 872 MUSMU|ENSMUSP00000040920 pep:known chromosome:GRCm38:6:52242108:52246214:-1 gene:ENSMUSG00000038210 transcript:ENSMUST00000048026 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 839 OTOGA|ENSOGAP00000011087 pep:known scaffold:OtoGar3:GL873547.1:9320162:9322501:-1 gene:ENSOGAG00000012389 transcript:ENSOGAT00000012391 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 854 NOMLE|ENSNLEP00000018229 pep:novel supercontig:Nleu1.0:GL397330.1:7049103:7052763:-1 gene:ENSNLEG00000014994 transcript:ENSNLET00000019137 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 878 PANTR|ENSPTRP00000032504 pep:known chromosome:CHIMP2.1.4:7:25770013:25774073:-1 gene:ENSPTRG00000019020 transcript:ENSPTRT00000035162 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 883 HOMSA|ENSP00000006015 pep:known chromosome:GRCh37:7:27221134:27224835:-1 gene:ENSG00000005073 transcript:ENST00000006015 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 884 HOMSA|gi|5031759|ref|NP_005514.1| homeobox protein Hox-A11 [Homo sapiens] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 876 PONAB|ENSPPYP00000019838 pep:known chromosome:PPYG2:7:57265250:57267598:1 gene:ENSPPYG00000017698 transcript:ENSPPYT00000020621 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 881 GORGO|ENSGGOP00000028169 pep:novel chromosome:gorGor3.1:7:27432302:27436355:-1 gene:ENSGGOG00000002226 transcript:ENSGGOT00000033915 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 945 TARSY|ENSTSYP00000005712 pep:novel scaffold:tarSyr1:scaffold_68988:6911:9441:-1 gene:ENSTSYG00000006241 transcript:ENSTSYT00000006241 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 895 CHOHO|ENSCHOP00000006566 pep:novel scaffold:choHof1:scaffold_1425:17652:19990:-1 gene:ENSCHOG00000007426 transcript:ENSCHOT00000007435 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 856 MACMU|ENSMMUP00000017695 pep:known chromosome:MMUL_1:3:99039905:99043604:1 gene:ENSMMUG00000013462 transcript:ENSMMUT00000018894 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 882 FELCA|ENSFCAP00000007362 pep:novel scaffold:CAT:scaffold_191502:190238:192552:-1 gene:ENSFCAG00000007945 transcript:ENSFCAT00000007948 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 893 DIPOR|ENSDORP00000005920 pep:novel genescaffold:dipOrd1:GeneScaffold_1458:133904:136323:-1 gene:ENSDORG00000006326 transcript:ENSDORT00000006325 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 750 CANFA|ENSCAFP00000004401 pep:novel chromosome:CanFam3.1:14:40355914:40359991:-1 gene:ENSCAFG00000002966 transcript:ENSCAFT00000004754 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 784 PTEVA|ENSPVAP00000002363 pep:novel genescaffold:pteVam1:GeneScaffold_1238:509169:511498:-1 gene:ENSPVAG00000002500 transcript:ENSPVAT00000002500 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 849 ORYCU|ENSOCUP00000013031 pep:known chromosome:oryCun2:10:11900706:11903066:-1 gene:ENSOCUG00000015170 transcript:ENSOCUT00000015161 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 797 ORYCU|ENSOCUP00000020150 pep:novel chromosome:oryCun2:10:11900706:11903066:-1 gene:ENSOCUG00000015170 transcript:ENSOCUT00000029728 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 918 CALJA|ENSCJAP00000015124 pep:known chromosome:C_jacchus3.2.1:8:28510578:28514645:1 gene:ENSCJAG00000008187 transcript:ENSCJAT00000015961 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 896 LOXAF|ENSLAFP00000024602 pep:novel supercontig:loxAfr3:scaffold_5:31284751:31287109:1 gene:ENSLAFG00000005482 transcript:ENSLAFT00000037432 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 857 GORGO|ENSGGOP00000018260 pep:novel chromosome:gorGor3.1:7:27432302:27436286:-1 gene:ENSGGOG00000002226 transcript:ENSGGOT00000026318 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 936 EQUCA|ENSECAP00000010944 pep:known chromosome:EquCab2:4:58212537:58214903:-1 gene:ENSECAG00000013229 transcript:ENSECAT00000013760 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 972 LOXAF|ENSLAFP00000027717 pep:novel supercontig:loxAfr3:scaffold_5:31284751:31287112:1 gene:ENSLAFG00000005482 transcript:ENSLAFT00000026458 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 880 GORGO|ENSGGOP00000002193 pep:novel chromosome:gorGor3.1:7:27433939:27436326:-1 gene:ENSGGOG00000002226 transcript:ENSGGOT00000002239 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 948 MICMU|ENSMICP00000000455 pep:novel genescaffold:micMur1:GeneScaffold_568:791041:793438:-1 gene:ENSMICG00000000500 transcript:ENSMICT00000000500 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 800 AILME|ENSAMEP00000006196 pep:novel scaffold:ailMel1:GL192349.1:2354888:2357160:1 gene:ENSAMEG00000005879 transcript:ENSAMET00000006450 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 80 gi|68437229|ref|XP_699549.1| PREDICTED: homeobox protein Hox-C11a isoform 2 [Danio rerio] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 81 DANRE|ENSDARP00000101188 pep:known chromosome:Zv9:11:2171560:2173211:-1 gene:ENSDARG00000079406 transcript:ENSDART00000111698 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 591 TETNI|ENSTNIP00000012068 pep:novel chromosome:TETRAODON8:21:3015983:3017454:1 gene:ENSTNIG00000001767 transcript:ENSTNIT00000012259 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 640 TETNI|ENSTNIP00000004129 pep:novel chromosome:TETRAODON8:21:3015983:3017454:1 gene:ENSTNIG00000001767 transcript:ENSTNIT00000004263 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 699 gi|94482757|gb|ABF22377.1| homeobox protein HoxA11a [Takifugu rubripes] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 701 gi|119370778|sp|Q1KL17.1|HXABA_TAKRU RecName: Full=Homeobox protein Hox-A11a +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 718 TAKRU|ENSTRUP00000040854 pep:known scaffold:FUGU4:scaffold_12:2365045:2373456:-1 gene:ENSTRUG00000015981 transcript:ENSTRUT00000040996 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 819 gi|47229430|emb|CAF99418.1| unnamed protein product [Tetraodon nigroviridis] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 919 gi|154183834|gb|ABS70774.1| Hoxa11a [Haplochromis burtoni] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 920 gi|348522811|ref|XP_003448917.1| PREDICTED: homeobox protein Hox-A11a-like [Oreochromis niloticus] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 921 ORENI|ENSONIP00000005792 pep:novel scaffold:Orenil1.0:GL831202.1:591643:594811:-1 gene:ENSONIG00000004600 transcript:ENSONIT00000005796 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 952 gi|83016925|dbj|BAE53457.1| hoxA11a [Oryzias latipes] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 953 gi|74267517|dbj|BAE44257.1| hoxA11a [Oryzias latipes] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 958 ORYLA|ENSORLP00000006348 pep:known chromosome:MEDAKA1:11:10551752:10553422:-1 gene:ENSORLG00000005037 transcript:ENSORLT00000006349 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 795 GADMO|ENSGMOP00000014817 pep:novel genescaffold:gadMor1:GeneScaffold_1730:92372:94014:-1 gene:ENSGMOG00000013882 transcript:ENSGMOT00000015199 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 866 gi|11611813|gb|AAG39067.1| Hoxa-11b [Devario aequipinnatus] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 868 gi|60392419|sp|Q9DDU2.1|HXABB_DEVAE RecName: Full=Homeobox protein Hox-A11b +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 886 gi|11611815|gb|AAG39068.1| Hoxa-11b [Danio rerio] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 887 gi|190338177|gb|AAI62917.1| Homeo box A11b [Danio rerio] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 888 gi|190338181|gb|AAI62927.1| Homeo box A11b [Danio rerio] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 889 gi|18858819|ref|NP_571222.1| homeobox protein Hox-A11b [Danio rerio] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 890 gi|60392418|sp|Q9DDU1.1|HXABB_DANRE RecName: Full=Homeobox protein Hox-A11b; Short=Hox-A11 +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 934 gi|123204428|gb|ABM73551.1| homeodomain protein [Megalobrama amblycephala] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 898 gi|154183802|gb|ABS70744.1| Hoxa11b [Haplochromis burtoni] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 901 gi|348533878|ref|XP_003454431.1| PREDICTED: homeobox protein Hox-A11b-like [Oreochromis niloticus] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 902 ORENI|ENSONIP00000003712 pep:novel scaffold:Orenil1.0:GL831286.1:1185365:1189918:1 gene:ENSONIG00000002963 transcript:ENSONIT00000003713 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 622 MONDO|ENSMODP00000000537 pep:novel chromosome:BROADO5:8:297328266:297330940:1 gene:ENSMODG00000000453 transcript:ENSMODT00000000551 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 685 MONDO|ENSMODP00000032327 pep:novel chromosome:BROADO5:8:297328263:297330943:1 gene:ENSMODG00000000453 transcript:ENSMODT00000033906 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 772 MACEU|ENSMEUP00000001201 pep:novel genescaffold:Meug_1.0:GeneScaffold_6117:13003:16310:-1 gene:ENSMEUG00000001311 transcript:ENSMEUT00000001308 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 703 MYOLU|ENSMLUP00000007581 pep:putative scaffold:Myoluc2.0:GL429819:3733480:3735949:1 gene:ENSMLUG00000008300 transcript:ENSMLUT00000008308 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 809 XENTR|ENSXETP00000001623 pep:known scaffold:JGI_4.2:GL172692.1:1397328:1399148:1 gene:ENSXETG00000000732 transcript:ENSXETT00000001623 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 900 gi|301607691|ref|XP_002933440.1| PREDICTED: homeobox protein Hox-A10-like [Xenopus (Silurana) tropicalis] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 826 PELSI|ENSPSIP00000002843 pep:novel scaffold:PelSin_1.0:JH224654.1:8732245:8734596:-1 gene:ENSPSIG00000002763 transcript:ENSPSIT00000002854 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 976 gi|211939|gb|AAA48823.1| homeodomain-containing protein [Gallus gallus] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 977 gi|363730042|ref|XP_003640756.1| PREDICTED: homeobox protein Hox-A11-like [Gallus gallus] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 978 gi|363730070|ref|XP_003640763.1| PREDICTED: homeobox protein Hox-A11-like isoform 1 [Gallus gallus] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 979 gi|399992|sp|P31258.1|HXA11_CHICK RecName: Full=Homeobox protein Hox-A11; AltName: Full=Ghox-1I; AltName: Full=Homeobox protein Hox-1.9; Short=Chox-1.9 +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 980 gi|45382911|ref|NP_989950.1| homeobox protein Hox-A11 [Gallus gallus] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 986 GALGA|ENSGALP00000037025 pep:known chromosome:WASHUC2:2:32599362:32603906:-1 gene:ENSGALG00000023130 transcript:ENSGALT00000037819 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 985 gi|363730072|ref|XP_003640764.1| PREDICTED: homeobox protein Hox-A11-like isoform 2 [Gallus gallus] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 943 ANOCA|ENSACAP00000010103 pep:novel scaffold:AnoCar2.0:GL343275.1:1403420:1407205:1 gene:ENSACAG00000010304 transcript:ENSACAT00000010310 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 997 SARHA|ENSSHAP00000019577 pep:novel scaffold:DEVIL7.0:GL861706.1:2255925:2258327:1 gene:ENSSHAG00000016623 transcript:ENSSHAT00000019734 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 603 GASAC|ENSGACP00000010970 pep:novel group:BROADS1:groupXX:9716854:9718596:1 gene:ENSGACG00000008297 transcript:ENSGACT00000010993 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 969 GASAC|ENSGACP00000009442 pep:novel group:BROADS1:groupX:9914069:9915690:-1 gene:ENSGACG00000007132 transcript:ENSGACT00000009462 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 148 gi|385654453|gb|AFI61957.1| Hox-A11a [Anguilla japonica] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 355 gi|332692467|gb|AEE90149.1| Homeobox A11a [Anguilla anguilla] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 571 gi|83016937|dbj|BAE53467.1| hoxA11b [Oryzias latipes] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 572 gi|74267527|dbj|BAE44262.1| hoxA11b [Oryzias latipes] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 607 ORYLA|ENSORLP00000009534 pep:known chromosome:MEDAKA1:16:13120119:13121655:1 gene:ENSORLG00000007608 transcript:ENSORLT00000009535 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 111 gi|172087274|ref|XP_001913179.1| Hox10 [Oikopleura dioica] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 112 gi|48994287|gb|AAT47861.1| Hox10 [Oikopleura dioica] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 113 gi|313230051|emb|CBY07755.1| unnamed protein product [Oikopleura dioica] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 114 gi|313245905|emb|CBY34887.1| unnamed protein product [Oikopleura dioica] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 115 OIKDI|GSOIDT00003106001 +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 790 gi|34304661|gb|AAQ63436.1| Hox10 [Oikopleura dioica] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 337 gi|70569887|dbj|BAE06496.1| transcription factor protein [Ciona intestinalis] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 341 CIOIN|ENSCINP00000001927 pep:known scaffold:KH:HT000052.1:98523:102849:-1 gene:ENSCING00000001031 transcript:ENSCINT00000001927 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 353 gi|27525477|emb|CAD59671.1| putative homeobox protein Hox10 [Ciona intestinalis] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 354 gi|74096477|ref|NP_001027696.1| hox10 protein [Ciona intestinalis] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 560 CIOSA|ENSCSAVP00000005910 pep:novel reftig:CSAV2.0:reftig_696:13762:21737:-1 gene:ENSCSAVG00000003530 transcript:ENSCSAVT00000005985 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 642 CIOSA|ENSCSAVP00000005911 pep:novel reftig:CSAV2.0:reftig_696:13762:21707:-1 gene:ENSCSAVG00000003530 transcript:ENSCSAVT00000005986 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 721 gi|452480|gb|AAA16226.1| homeobox protein, partial [Styela clava] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 818 gi|454798|gb|AAA16288.1| homeobox protein, partial [Styela plicata] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 689 gi|157815954|gb|ABV81996.1| homeobox protein HoxC10ab [Salmo salar] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 690 gi|158702333|gb|ABW77523.1| homeobox protein HoxC10ab [Salmo salar] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 691 gi|213513926|ref|NP_001133004.1| homeobox protein HoxC10ab [Salmo salar] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 855 gi|255742473|gb|ACU32585.1| homeobox protein HoxD10 [Callorhinchus milii] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 928 gi|7271822|gb|AAF44634.1|AF224263_4 HoxD10 [Heterodontus francisci] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 930 gi|14916587|sp|Q9IA14.1|HXD10_HETFR RecName: Full=Homeobox protein Hox-D10 +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 717 gi|332692520|gb|AEE90196.1| Homeobox C10b [Anguilla anguilla] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 927 GADMO|ENSGMOP00000019207 pep:novel genescaffold:gadMor1:GeneScaffold_1797:113062:118465:1 gene:ENSGMOG00000017875 transcript:ENSGMOT00000019671 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 105 gi|74267591|dbj|BAE44294.1| hoxD9b [Oryzias latipes] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 106 gi|83016985|dbj|BAE53502.1| hoxD9b [Oryzias latipes] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 426 ORYLA|ENSORLP00000001666 pep:known chromosome:MEDAKA1:15:4374365:4380128:-1 gene:ENSORLG00000001349 transcript:ENSORLT00000001667 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 166 TAKRU|ENSTRUP00000024023 pep:known scaffold:FUGU4:scaffold_39:583315:584944:1 gene:ENSTRUG00000009562 transcript:ENSTRUT00000024122 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 406 gi|61200953|gb|AAX39848.1| HoxD9b, partial [Takifugu rubripes] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 167 gi|94482863|gb|ABF22477.1| homeobox protein HoxD9b [Takifugu rubripes] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 168 gi|119370802|sp|Q1KKR7.1|HXD9B_TAKRU RecName: Full=Homeobox protein Hox-D9b +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 212 TAKRU|ENSTRUP00000024024 pep:known scaffold:FUGU4:scaffold_39:583339:584944:1 gene:ENSTRUG00000009562 transcript:ENSTRUT00000024123 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 249 TETNI|ENSTNIP00000004143 pep:novel chromosome:TETRAODON8:17:9699262:9700856:1 gene:ENSTNIG00000001779 transcript:ENSTNIT00000004277 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 646 TAKRU|ENSTRUP00000024025 pep:known scaffold:FUGU4:scaffold_39:584465:584926:1 gene:ENSTRUG00000009562 transcript:ENSTRUT00000024124 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 182 gi|348501466|ref|XP_003438290.1| PREDICTED: homeobox protein Hox-D9b-like [Oreochromis niloticus] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 183 ORENI|ENSONIP00000001695 pep:novel scaffold:Orenil1.0:GL831135.1:8150585:8154870:-1 gene:ENSONIG00000001343 transcript:ENSONIT00000001694 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 227 ORENI|ENSONIP00000001696 pep:novel scaffold:Orenil1.0:GL831135.1:8150585:8154870:-1 gene:ENSONIG00000001343 transcript:ENSONIT00000001695 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 211 gi|154183861|gb|ABS70798.1| Hoxd9b [Haplochromis burtoni] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 131 GASAC|ENSGACP00000015743 pep:novel group:BROADS1:groupVI:16160314:16162603:1 gene:ENSGACG00000011902 transcript:ENSGACT00000015774 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 381 GADMO|ENSGMOP00000004128 pep:novel genescaffold:gadMor1:GeneScaffold_2339:2973:5476:1 gene:ENSGMOG00000003887 transcript:ENSGMOT00000004255 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 124 gi|332692495|gb|AEE90174.1| Homeobox B9b [Anguilla anguilla] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 966 gi|385654488|gb|AFI61987.1| Hox-B9b, partial [Anguilla japonica] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 160 gi|158702264|gb|ABW77463.1| homeobox protein HoxB9aa [Salmo salar] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 175 gi|157816101|gb|ABV82069.1| homeobox protein HoxB9ab [Salmo salar] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 176 gi|158702276|gb|ABW77474.1| homeobox protein HoxB9ab [Salmo salar] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 178 gi|213514632|ref|NP_001135098.1| homeobox protein HoxB9ab [Salmo salar] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 320 DANRE|ENSDARP00000007852 pep:known chromosome:Zv9:3:23968742:23973665:1 gene:ENSDARG00000056023 transcript:ENSDART00000006479 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 338 gi|4322080|gb|AAD15949.1| homeobox protein [Danio rerio] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 339 gi|56790313|ref|NP_571196.1| homeobox protein Hox-B9a [Danio rerio] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 346 gi|110825727|sp|Q9PWM2.2|HXB9A_DANRE RecName: Full=Homeobox protein Hox-B9a; Short=Hox-B9 +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 347 DANRE|ENSDARP00000022169 pep:known chromosome:Zv9:3:23968592:23973677:1 gene:ENSDARG00000056023 transcript:ENSDART00000023674 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 368 gi|66911681|gb|AAH96950.1| Hoxb9a protein [Danio rerio] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 992 gi|123204485|gb|ABM73566.1| homeodomain protein [Megalobrama amblycephala] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 668 gi|332692485|gb|AEE90165.1| Homeobox B9a [Anguilla anguilla] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 669 gi|385654476|gb|AFI61977.1| Hox-B9a [Anguilla japonica] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 302 TETNI|ENSTNIP00000004127 pep:novel chromosome:TETRAODON8:Un_random:5560244:5566775:-1 gene:ENSTNIG00000010822 transcript:ENSTNIT00000004261 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 480 gi|94482794|gb|ABF22412.1| homeobox protein HoxB9a [Takifugu rubripes] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 482 gi|119370790|sp|Q1KKY2.1|HXB9A_TAKRU RecName: Full=Homeobox protein Hox-B9a +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 326 TETNI|ENSTNIP00000013750 pep:novel chromosome:TETRAODON8:Un_random:5560244:5566775:-1 gene:ENSTNIG00000010822 transcript:ENSTNIT00000013944 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 332 TAKRU|ENSTRUP00000023836 pep:known scaffold:FUGU4:scaffold_41:534334:541200:1 gene:ENSTRUG00000009487 transcript:ENSTRUT00000023934 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 343 TAKRU|ENSTRUP00000023835 pep:known scaffold:FUGU4:scaffold_41:534334:541200:1 gene:ENSTRUG00000009487 transcript:ENSTRUT00000023933 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 404 TAKRU|ENSTRUP00000023832 pep:known scaffold:FUGU4:scaffold_41:534334:541200:1 gene:ENSTRUG00000009487 transcript:ENSTRUT00000023930 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 488 TAKRU|ENSTRUP00000023834 pep:known scaffold:FUGU4:scaffold_41:534334:541200:1 gene:ENSTRUG00000009487 transcript:ENSTRUT00000023932 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 674 TAKRU|ENSTRUP00000023833 pep:known scaffold:FUGU4:scaffold_41:534334:541200:1 gene:ENSTRUG00000009487 transcript:ENSTRUT00000023931 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 971 OTOGA|ENSOGAP00000007769 pep:novel scaffold:OtoGar3:GL873537.1:26810296:26813661:-1 gene:ENSOGAG00000008668 transcript:ENSOGAT00000008669 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 587 gi|154183795|gb|ABS70738.1| Hoxb9a [Haplochromis burtoni] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 609 gi|348517811|ref|XP_003446426.1| PREDICTED: homeobox protein Hox-B9a-like [Oreochromis niloticus] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 610 ORENI|ENSONIP00000007786 pep:novel scaffold:Orenil1.0:GL831179.1:110809:119779:1 gene:ENSONIG00000006179 transcript:ENSONIT00000007791 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 697 XENTR|ENSXETP00000057085 pep:known scaffold:JGI_4.2:GL172970.1:578562:589462:-1 gene:ENSXETG00000027350 transcript:ENSXETT00000057085 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 802 gi|89269520|emb|CAJ82382.1| homeo box B9 [Xenopus (Silurana) tropicalis] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 803 gi|37590431|gb|AAH59757.1| homeobox B9 [Xenopus (Silurana) tropicalis] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 804 gi|45360913|ref|NP_988879.1| homeobox B9 [Xenopus (Silurana) tropicalis] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 781 XENTR|ENSXETP00000025572 pep:known scaffold:JGI_4.2:GL172970.1:578562:589462:-1 gene:ENSXETG00000027350 transcript:ENSXETT00000025572 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 614 gi|327275822|ref|XP_003222671.1| PREDICTED: homeobox protein Hox-B9-like [Anolis carolinensis] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 615 ANOCA|ENSACAP00000006259 pep:novel chromosome:AnoCar2.0:6:75640473:75645469:-1 gene:ENSACAG00000006412 transcript:ENSACAT00000006398 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 791 gi|37528841|gb|AAQ92346.1| transcription factor HoxB9, partial [Pleurodeles waltl] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 770 PELSI|ENSPSIP00000007731 pep:novel scaffold:PelSin_1.0:JH208036.1:1163307:1166962:1 gene:ENSPSIG00000007113 transcript:ENSPSIT00000007772 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 792 GALGA|ENSGALP00000001945 pep:known chromosome:WASHUC2:27:3563906:3569245:1 gene:ENSGALG00000001276 transcript:ENSGALT00000001947 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 601 gi|400004|sp|P31272.1|HXB9_XENLA RecName: Full=Homeobox protein Hox-B9; AltName: Full=XlHbox-6 +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 910 gi|76779965|gb|AAI06422.1| Unknown (protein for MGC:131095) [Xenopus laevis] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 911 gi|291290915|ref|NP_001167488.1| homeobox B9 [Xenopus laevis] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 507 gi|220898197|gb|ACL81452.1| HoxB9 [Latimeria menadoensis] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 509 LATCH|ENSLACP00000017173 pep:novel scaffold:LatCha1:JH126617.1:1180186:1186628:-1 gene:ENSLACG00000015129 transcript:ENSLACT00000017299 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 961 ORYCU|ENSOCUP00000016016 pep:novel chromosome:oryCun2:19:38737505:38740733:1 gene:ENSOCUG00000027316 transcript:ENSOCUT00000029474 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 925 gi|7271835|gb|AAF44646.1|AF224262_8 HoxA9 [Heterodontus francisci] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 926 gi|14916598|sp|Q9IA26.1|HXA9_HETFR RecName: Full=Homeobox protein Hox-A9 +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 955 gi|301128872|emb|CBL59336.1| HoxA9 [Scyliorhinus canicula] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 984 gi|254212174|gb|ACT65749.1| Hoxa9 [Leucoraja erinacea] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 520 gi|83016951|dbj|BAE53478.1| hoxB9a [Oryzias latipes] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 521 gi|74267545|dbj|BAE44271.1| hoxB9a [Oryzias latipes] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 522 ORYLA|ENSORLP00000021315 pep:known chromosome:MEDAKA1:8:24308256:24318774:1 gene:ENSORLG00000017035 transcript:ENSORLT00000021316 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 653 ORNAN|ENSOANP00000013736 pep:known ultracontig:OANA5:Ultra514:14665871:14674260:1 gene:ENSOANG00000008615 transcript:ENSOANT00000013739 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 626 gi|220898184|gb|ACL81440.1| HoxA9 [Latimeria menadoensis] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 627 LATCH|ENSLACP00000019754 pep:novel scaffold:LatCha1:JH126711.1:2054742:2056323:-1 gene:ENSLACG00000017369 transcript:ENSLACT00000019892 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 663 LOXAF|ENSLAFP00000024719 pep:novel supercontig:loxAfr3:scaffold_5:31304543:31306430:1 gene:ENSLAFG00000008970 transcript:ENSLAFT00000036964 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 705 LOXAF|ENSLAFP00000007527 pep:novel supercontig:loxAfr3:scaffold_5:31304543:31306430:1 gene:ENSLAFG00000008970 transcript:ENSLAFT00000008969 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 832 RATNO|ENSRNOP00000009487 pep:known chromosome:RGSC3.4:4:80524247:80526250:-1 gene:ENSRNOG00000006906 transcript:ENSRNOT00000009487 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 840 MUSMU|ENSMUSP00000046939 pep:known chromosome:GRCm38:6:52223100:52227370:-1 gene:ENSMUSG00000038227 transcript:ENSMUST00000048680 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 708 MICMU|ENSMICP00000000450 pep:novel genescaffold:micMur1:GeneScaffold_568:767066:768937:-1 gene:ENSMICG00000000497 transcript:ENSMICT00000000495 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 775 SUSSC|ENSSSCP00000017690 pep:novel chromosome:Sscrofa10.2:18:50041645:50043875:1 gene:ENSSSCG00000016700 transcript:ENSSSCT00000018181 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 776 SUSSC|ENSSSCP00000021454 pep:novel chromosome:Sscrofa10.2:18:49840681:49842577:1 gene:ENSSSCG00000028997 transcript:ENSSSCT00000029161 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 806 FELCA|ENSFCAP00000007359 pep:novel scaffold:CAT:scaffold_191502:166306:168384:-1 gene:ENSFCAG00000007944 transcript:ENSFCAT00000007945 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 807 CANFA|ENSCAFP00000004393 pep:novel chromosome:CanFam3.1:14:40337999:40339923:-1 gene:ENSCAFG00000002961 transcript:ENSCAFT00000004746 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 834 AILME|ENSAMEP00000006204 pep:novel scaffold:ailMel1:GL192349.1:2374513:2376398:1 gene:ENSAMEG00000005885 transcript:ENSAMET00000006458 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 816 MACMU|ENSMMUP00000017692 pep:known chromosome:MMUL_1:3:99059931:99063012:1 gene:ENSMMUG00000013459 transcript:ENSMMUT00000018891 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 877 PONAB|ENSPPYP00000019840 pep:known chromosome:PPYG2:7:57285200:57287053:1 gene:ENSPPYG00000017700 transcript:ENSPPYT00000020623 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 833 PANTR|ENSPTRP00000048101 pep:known chromosome:CHIMP2.1.4:7:25751279:25754375:-1 gene:ENSPTRG00000019018 transcript:ENSPTRT00000055571 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 851 HOMSA|ENSP00000343619 pep:known chromosome:GRCh37:7:27202054:27205149:-1 gene:ENSG00000078399 transcript:ENST00000343483 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 852 HOMSA|gi|23097236|ref|NP_689952.1| homeobox protein Hox-A9 [Homo sapiens] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 904 GORGO|ENSGGOP00000002189 pep:novel chromosome:gorGor3.1:7:27413561:27416656:-1 gene:ENSGGOG00000002222 transcript:ENSGGOT00000002235 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 831 SORAR|ENSSARP00000005026 pep:novel genescaffold:COMMON_SHREW1:GeneScaffold_1493:127922:130320:-1 gene:ENSSARG00000005576 transcript:ENSSART00000005550 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 782 TUPBE|ENSTBEP00000009507 pep:novel scaffold:TREESHREW:scaffold_121135:80437:82314:-1 gene:ENSTBEG00000011012 transcript:ENSTBET00000010993 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 801 EQUCA|ENSECAP00000006424 pep:known chromosome:EquCab2:4:58193228:58195216:-1 gene:ENSECAG00000008431 transcript:ENSECAT00000008560 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 871 NOMLE|ENSNLEP00000018226 pep:novel supercontig:Nleu1.0:GL397330.1:7030215:7033300:-1 gene:ENSNLEG00000014992 transcript:ENSNLET00000019133 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 853 OTOGA|ENSOGAP00000013426 pep:known scaffold:OtoGar3:GL873547.1:9301032:9302931:-1 gene:ENSOGAG00000015000 transcript:ENSOGAT00000015002 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 793 PTEVA|ENSPVAP00000002359 pep:novel genescaffold:pteVam1:GeneScaffold_1238:489770:491656:-1 gene:ENSPVAG00000002497 transcript:ENSPVAT00000002496 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 720 CAVPO|ENSCPOP00000010215 pep:known scaffold:cavPor3:scaffold_44:3901634:3903476:-1 gene:ENSCPOG00000011365 transcript:ENSCPOT00000011471 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 764 ICTTR|ENSSTOP00000018744 pep:novel scaffold:spetri2:JH393288.1:3770241:3793768:-1 gene:ENSSTOG00000028613 transcript:ENSSTOT00000028030 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 894 DIPOR|ENSDORP00000005917 pep:novel genescaffold:dipOrd1:GeneScaffold_1458:114204:116299:-1 gene:ENSDORG00000006323 transcript:ENSDORT00000006322 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 798 ORYCU|ENSOCUP00000025306 pep:novel chromosome:oryCun2:10:11882131:11883940:-1 gene:ENSOCUG00000020585 transcript:ENSOCUT00000028906 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 850 ORYCU|ENSOCUP00000019782 pep:known chromosome:oryCun2:10:11882131:11883940:-1 gene:ENSOCUG00000020585 transcript:ENSOCUT00000026926 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 951 MACMU|ENSMMUP00000017693 pep:known chromosome:MMUL_1:3:99059984:99061850:1 gene:ENSMMUG00000013459 transcript:ENSMMUT00000018892 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 970 PANTR|ENSPTRP00000032502 pep:known chromosome:CHIMP2.1.4:7:25751279:25754297:-1 gene:ENSPTRG00000019018 transcript:ENSPTRT00000035160 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 917 ERIEU|ENSEEUP00000008990 pep:novel scaffold:HEDGEHOG:scaffold_374504:51257:53364:1 gene:ENSEEUG00000009872 transcript:ENSEEUT00000009866 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 728 OCHPR|ENSOPRP00000009549 pep:novel genescaffold:pika:GeneScaffold_1021:130736:132704:-1 gene:ENSOPRG00000010452 transcript:ENSOPRT00000010450 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 751 CALJA|ENSCJAP00000015011 pep:known chromosome:C_jacchus3.2.1:8:28530432:28533130:1 gene:ENSCJAG00000008096 transcript:ENSCJAT00000015840 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 767 gi|122936364|gb|AAI30087.1| LOC100037070 protein [Xenopus laevis] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 769 gi|148234522|ref|NP_001091264.1| homeobox A9 [Xenopus laevis] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 923 XENTR|ENSXETP00000001611 pep:known scaffold:JGI_4.2:GL172692.1:1415310:1416638:1 gene:ENSXETG00000000724 transcript:ENSXETT00000001611 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 810 ORNAN|ENSOANP00000014594 pep:known ultracontig:OANA5:Ultra231:2298988:2301103:-1 gene:ENSOANG00000009170 transcript:ENSOANT00000014597 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 859 ORNAN|ENSOANP00000014595 pep:known ultracontig:OANA5:Ultra231:2298988:2301103:-1 gene:ENSOANG00000009170 transcript:ENSOANT00000014598 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 915 MACEU|ENSMEUP00000011278 pep:novel scaffold:Meug_1.0:Scaffold140571:3217:5589:-1 gene:ENSMEUG00000012377 transcript:ENSMEUT00000012404 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 846 CALJA|ENSCJAP00000015074 pep:novel chromosome:C_jacchus3.2.1:8:28530477:28533062:1 gene:ENSCJAG00000008096 transcript:ENSCJAT00000015908 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 981 PANTR|ENSPTRP00000032501 pep:known chromosome:CHIMP2.1.4:7:25751279:25758521:-1 gene:ENSPTRG00000019018 transcript:ENSPTRT00000035158 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 989 gi|363730030|ref|XP_003640751.1| PREDICTED: homeobox protein Hox-A9-like [Gallus gallus] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 990 gi|363730038|ref|XP_003640754.1| PREDICTED: homeobox protein Hox-A9-like [Gallus gallus] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 991 gi|363730219|ref|XP_003640782.1| PREDICTED: homeobox protein Hox-A9 [Gallus gallus] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 993 gi|224045308|ref|XP_002195243.1| PREDICTED: homeobox A9 [Taeniopygia guttata] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 994 TAEGU|ENSTGUP00000003007 pep:novel chromosome:taeGut3.2.4:2:52621121:52622902:-1 gene:ENSTGUG00000002921 transcript:ENSTGUT00000003036 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 899 gi|255742449|gb|ACU32563.1| homeobox protein HoxB9 [Callorhinchus milii] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 613 gi|255742474|gb|ACU32586.1| homeobox protein HoxD9 [Callorhinchus milii] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 300 gi|397327508|gb|AFO42770.1| HOXD9 [Polyodon spathula] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 564 gi|397327517|gb|AFO42778.1| HOXD9 [Polyodon spathula] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 352 gi|225715912|gb|ACO13802.1| Homeobox protein Hox-D9a [Esox lucius] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 372 gi|157816013|gb|ABV82025.1| homeobox protein HoxD9aa [Salmo salar] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 373 gi|213511290|ref|NP_001135141.1| homeobox protein HoxD9aa [Salmo salar] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 382 gi|158702367|gb|ABW77554.1| homeobox protein HoxD9aa [Salmo salar] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 964 gi|327280442|ref|XP_003224961.1| PREDICTED: homeobox protein Hox-A9-like [Anolis carolinensis] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 342 gi|169154435|emb|CAQ15518.1| homeo box D9a [Danio rerio] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 398 gi|34784079|gb|AAH56695.1| Homeo box D9a [Danio rerio] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 428 gi|115502399|sp|Q9PWM6.2|HXD9A_DANRE RecName: Full=Homeobox protein Hox-D9a; Short=Hox-D9 +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 429 gi|237681166|ref|NP_571201.3| homeobox protein Hox-D9a [Danio rerio] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 430 DANRE|ENSDARP00000076790 pep:known chromosome:Zv9:9:1954804:1956526:-1 gene:ENSDARG00000059274 transcript:ENSDART00000082354 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 448 gi|4322104|gb|AAD15961.1| homeobox protein [Danio rerio] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 345 gi|225707232|gb|ACO09462.1| Homeobox protein Hox-D9a [Osmerus mordax] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 422 gi|332692531|gb|AEE90206.1| Homeobox D9a [Anguilla anguilla] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 425 gi|385654528|gb|AFI62022.1| Hox-D9a [Anguilla japonica] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 196 gi|157816027|gb|ABV82032.1| homeobox protein HoxD9ab [Salmo salar] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 197 gi|213514096|ref|NP_001135095.1| homeobox protein HoxD9ab [Salmo salar] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 222 gi|158702377|gb|ABW77563.1| homeobox protein HoxD9ab [Salmo salar] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 374 gi|332692540|gb|AEE90214.1| Homeobox D9b [Anguilla anguilla] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 375 gi|385654537|gb|AFI62030.1| Hox-D9b [Anguilla japonica] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 449 gi|400180336|gb|AFP73303.1| Hoxa9beta [Polyodon spathula] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 932 gi|400180324|gb|AFP73292.1| Hoxa9alpha [Polyodon spathula] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 506 gi|66476113|gb|AAX63764.2| HoxC9bi [Oncorhynchus mykiss] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 461 TETNI|ENSTNIP00000020079 pep:novel chromosome:TETRAODON8:2:13432202:13433362:-1 gene:ENSTNIG00000016957 transcript:ENSTNIT00000020310 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 484 gi|47218112|emb|CAG09984.1| unnamed protein product [Tetraodon nigroviridis] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 487 gi|220898218|gb|ACL81471.1| HoxD9 [Latimeria menadoensis] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 501 LATCH|ENSLACP00000010410 pep:novel scaffold:LatCha1:JH127184.1:399842:400954:-1 gene:ENSLACG00000009170 transcript:ENSLACT00000010489 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 421 gi|348519659|ref|XP_003447347.1| PREDICTED: homeobox protein Hox-D9a-like [Oreochromis niloticus] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 423 ORENI|ENSONIP00000010828 pep:novel scaffold:Orenil1.0:GL831187.1:822318:825907:-1 gene:ENSONIG00000008613 transcript:ENSONIT00000010837 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 452 gi|154183856|gb|ABS70794.1| Hoxd9a [Haplochromis burtoni] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 456 GADMO|ENSGMOP00000004528 pep:novel genescaffold:gadMor1:GeneScaffold_1009:385317:386394:-1 gene:ENSGMOG00000004271 transcript:ENSGMOT00000004664 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 467 GASAC|ENSGACP00000006017 pep:novel group:BROADS1:groupXVI:9814135:9815452:-1 gene:ENSGACG00000004556 transcript:ENSGACT00000006034 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 485 gi|58803015|gb|AAW82627.1| HoxD9a [Gasterosteus aculeatus] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 891 GASAC|ENSGACP00000006013 pep:novel group:BROADS1:groupXVI:9813729:9815121:-1 gene:ENSGACG00000004556 transcript:ENSGACT00000006030 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 652 ORYLA|ENSORLP00000021948 pep:known chromosome:MEDAKA1:21:24614901:24616181:1 gene:ENSORLG00000017544 transcript:ENSORLT00000021949 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 860 gi|74267581|dbj|BAE44289.1| hoxD9a [Oryzias latipes] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 861 gi|83016978|dbj|BAE53499.1| hoxD9a [Oryzias latipes] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 922 ORYLA|ENSORLP00000021949 pep:known chromosome:MEDAKA1:21:24614901:24616114:1 gene:ENSORLG00000017544 transcript:ENSORLT00000021950 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 954 gi|6252902|dbj|BAA86250.1| HOXD9A [Oryzias latipes] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 956 gi|319996661|ref|NP_001188420.1| homeobox protein Hox-D9 [Oryzias latipes] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 957 gi|21263750|sp|Q9PVR2.1|HXD9_ORYLA RecName: Full=Homeobox protein Hox-D9 +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 392 gi|94482850|gb|ABF22465.1| homeobox protein HoxD9a [Takifugu rubripes] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 393 gi|119370801|sp|Q1KKS9.1|HXD9A_TAKRU RecName: Full=Homeobox protein Hox-D9a +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 394 TAKRU|ENSTRUP00000044917 pep:known scaffold:FUGU4:scaffold_100:358374:359556:-1 gene:ENSTRUG00000017521 transcript:ENSTRUT00000045069 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 523 TAKRU|ENSTRUP00000044916 pep:known scaffold:FUGU4:scaffold_100:358374:359556:-1 gene:ENSTRUG00000017521 transcript:ENSTRUT00000045068 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 752 gi|94733688|emb|CAK10848.1| homeo box A9a [Danio rerio] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 753 gi|60416115|gb|AAH90700.1| Homeo box A9a [Danio rerio] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 754 gi|182889636|gb|AAI65442.1| Hoxa9a protein [Danio rerio] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 755 gi|62751911|ref|NP_571607.2| homeobox protein Hox-A9a [Danio rerio] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 756 gi|110282970|sp|Q9PWL6.2|HXA9A_DANRE RecName: Full=Homeobox protein Hox-A9a; Short=Hoxx9 +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 757 DANRE|ENSDARP00000009894 pep:known chromosome:Zv9:19:19215846:19217890:1 gene:ENSDARG00000009461 transcript:ENSDART00000006934 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 758 DANRE|ENSDARP00000121644 pep:known chromosome:Zv9:19:19213175:19217054:1 gene:ENSDARG00000009461 transcript:ENSDART00000147736 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 779 gi|4322064|gb|AAD15941.1| homeobox protein [Danio rerio] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 466 GASAC|ENSGACP00000009434 pep:novel group:BROADS1:groupX:9901356:9902621:-1 gene:ENSGACG00000007123 transcript:ENSGACT00000009454 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 965 gi|385654455|gb|AFI61959.1| Hox-A9a [Anguilla japonica] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 983 gi|332692469|gb|AEE90151.1| Homeobox A9a [Anguilla anguilla] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 549 gi|94482759|gb|ABF22379.1| homeobox protein HoxA9a [Takifugu rubripes] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 550 gi|2341093|gb|AAB68684.1| homeodomain protein HOXA-9 [Takifugu rubripes] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 552 gi|6016294|sp|O42506.1|HXA9A_TAKRU RecName: Full=Homeobox protein Hox-A9a; Short=HoxA-9 +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 553 TAKRU|ENSTRUP00000040839 pep:known scaffold:FUGU4:scaffold_12:2360012:2361166:-1 gene:ENSTRUG00000015974 transcript:ENSTRUT00000040981 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 566 TETNI|ENSTNIP00000000288 pep:known chromosome:TETRAODON8:21:3028251:3029412:1 gene:ENSTNIG00000001582 transcript:ENSTNIT00000001153 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 586 gi|47229431|emb|CAF99419.1| unnamed protein product [Tetraodon nigroviridis] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 578 gi|5669602|gb|AAD46396.1|AF089743_2 homeodomain protein Hox-A9 [Morone saxatilis] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 579 gi|14916603|sp|Q9PWD5.1|HXA9_MORSA RecName: Full=Homeobox protein Hox-A9 +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 655 gi|348522807|ref|XP_003448915.1| PREDICTED: homeobox protein Hox-A9-like [Oreochromis niloticus] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 656 ORENI|ENSONIP00000005788 pep:novel scaffold:Orenil1.0:GL831202.1:579265:580451:-1 gene:ENSONIG00000004597 transcript:ENSONIT00000005792 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 676 gi|154183832|gb|ABS70772.1| Hoxa9a [Haplochromis burtoni] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 695 gi|6252950|dbj|BAA86255.1| HOXA9A [Oryzias latipes] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 696 gi|157278072|ref|NP_001098136.1| HOXA9A [Oryzias latipes] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 709 gi|83016927|dbj|BAE53459.1| hoxA9a [Oryzias latipes] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 710 gi|74267513|dbj|BAE44255.1| hoxA9a [Oryzias latipes] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 771 ORYLA|ENSORLP00000006337 pep:known chromosome:MEDAKA1:11:10539573:10540702:-1 gene:ENSORLG00000005025 transcript:ENSORLT00000006338 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 310 gi|158702218|gb|ABW77440.1| homeobox protein HoxA9aa [Salmo salar] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 864 gi|157816059|gb|ABV82048.1| homeobox protein HoxA9ab [Salmo salar] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 865 gi|158702238|gb|ABW77450.1| homeobox protein HoxA9ab [Salmo salar] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 869 gi|213515310|ref|NP_001133038.1| homeobox protein HoxA9ab [Salmo salar] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 472 gi|121308924|dbj|BAF43727.1| transcription factor Hox9/10 [Metacrinus rotundus] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 277 GADMO|ENSGMOP00000014810 pep:novel genescaffold:gadMor1:GeneScaffold_1730:79103:80307:-1 gene:ENSGMOG00000013861 transcript:ENSGMOT00000015191 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 251 gi|8926609|gb|AAF81909.1| homeodomain-containing protein Hox11 [Branchiostoma floridae] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 568 gi|116574504|gb|ABK00020.1| hox 6 [Saccoglossus kowalevskii] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 569 gi|259013408|ref|NP_001158411.1| homeobox 6 [Saccoglossus kowalevskii] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 706 gi|38016609|gb|AAR07638.1| transcription factor Hox9/10 [Ptychodera flava] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 897 gi|255755653|dbj|BAH96552.1| homeodomain transcription factor [Balanoglossus simodensis] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 516 gi|217035835|gb|ACJ74389.1| Hox10 [Branchiostoma lanceolatum] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 350 gi|116574506|gb|ABK00021.1| hox 9/10 [Saccoglossus kowalevskii] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 351 gi|259013410|ref|NP_001158412.1| homeobox 9/10 [Saccoglossus kowalevskii] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 454 gi|38016607|gb|AAR07637.1| transcription factor Hox6 [Ptychodera flava] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 567 gi|254692760|dbj|BAH23875.2| transcription factor Hox6 [Balanoglossus misakiensis] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 530 gi|255755647|dbj|BAH96549.1| homeodomain transcription factor [Balanoglossus simodensis] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 399 gi|254692758|dbj|BAH23874.2| transcription factor Hox5 [Balanoglossus misakiensis] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 431 gi|38016605|gb|AAR07636.1| transcription factor Hox5 [Ptychodera flava] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 643 gi|83016948|dbj|BAE53475.1| hoxB5a [Oryzias latipes] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 644 gi|74267539|dbj|BAE44268.1| hoxB5a [Oryzias latipes] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 683 ORYLA|ENSORLP00000021319 pep:novel chromosome:MEDAKA1:8:24366585:24368533:1 gene:ENSORLG00000017041 transcript:ENSORLT00000021320 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 733 NEMVE|jgi|Nemve1|197021|fgenesh1_pg.scaffold_4000101 +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 734 NEMVE|jgi|Nemve1|238194|estExt_fgenesh1_pg.C_40100 +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 735 NEMVE|jgi|Nemve1|158544|estExt_gwp.C_40217 +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 736 NEMVE|jgi|Nemve1|158543|estExt_gwp.C_40216 +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 737 NEMVE|jgi|Nemve1|158542|estExt_gwp.C_40215 +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 738 NEMVE|jgi|Nemve1|158541|estExt_gwp.C_40214 +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 739 NEMVE|jgi|Nemve1|177792|estExt_GenewiseH_1.C_40217 +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 740 NEMVE|jgi|Nemve1|177791|estExt_GenewiseH_1.C_40216 +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 741 NEMVE|jgi|Nemve1|177790|estExt_GenewiseH_1.C_40215 +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 742 NEMVE|jgi|Nemve1|177789|estExt_GenewiseH_1.C_40214 +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 605 gi|251857555|gb|ACT22573.1| posterior Hox2 [Convolutriloba retrogemma] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 830 gi|251857553|gb|ACT22572.1| posterior Hox1 [Convolutriloba retrogemma] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 885 gi|258678269|gb|ACV87741.1| posterior class Hox protein [Convolutriloba longifissura] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 704 gi|88604716|gb|ABD46729.1| homeobox protein sex comb reduced [Nymphon gracile] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 243 gi|321475836|gb|EFX86798.1| putative homeotic abdominal-B protein [Daphnia pulex] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 262 gi|1574934|gb|AAB09408.1| HEHBOX10, partial [Heliocidaris erythrogramma] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 266 gi|390351579|ref|XP_783216.2| PREDICTED: homeobox protein abdominal-A homolog [Strongylocentrotus purpuratus] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 267 STRPU|gi|390351579|ref|XP_783216.2| PREDICTED: homeobox protein abdominal-A homolog [Strongylocentrotus purpuratus] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 672 gi|268576250|ref|XP_002643105.1| C. briggsae CBR-PHP-3 protein [Caenorhabditis briggsae] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 715 CAEBR|CBG23030 pep:known chromosome:CB4:chrIII:13547598:13550579:1 gene:CBG23030 transcript:CBG23030 +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 60 TETNI|ENSTNIP00000004145 pep:known chromosome:TETRAODON8:8:6784648:6785771:1 gene:ENSTNIG00000001781 transcript:ENSTNIT00000004279 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 594 gi|47225515|emb|CAG11998.1| unnamed protein product [Tetraodon nigroviridis] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 151 TAKRU|ENSTRUP00000039266 pep:novel scaffold:FUGU4:scaffold_48:1084983:1085990:-1 gene:ENSTRUG00000015364 transcript:ENSTRUT00000039407 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 155 gi|94482779|gb|ABF22398.1| homeobox protein HoxA13b [Takifugu rubripes] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 156 gi|119370781|sp|Q1KKZ6.1|HXADB_TAKRU RecName: Full=Homeobox protein Hox-A13b +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 157 TAKRU|ENSTRUP00000039265 pep:novel scaffold:FUGU4:scaffold_48:1084734:1085990:-1 gene:ENSTRUG00000015364 transcript:ENSTRUT00000039406 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 359 gi|158702250|gb|ABW77456.1| homeobox protein HoxA13b [Salmo salar] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 362 gi|157816071|gb|ABV82054.1| homeobox protein HoxA13b [Salmo salar] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 363 gi|213511200|ref|NP_001133042.1| homeobox protein Hox-A13b [Salmo salar] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 146 gi|83016936|dbj|BAE53466.1| hoxA13b [Oryzias latipes] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 147 gi|74267529|dbj|BAE44263.1| hoxA13b [Oryzias latipes] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 149 ORYLA|ENSORLP00000009524 pep:known chromosome:MEDAKA1:16:13115192:13116162:1 gene:ENSORLG00000007597 transcript:ENSORLT00000009525 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 154 ORYLA|ENSORLP00000009523 pep:known chromosome:MEDAKA1:16:13115192:13116836:1 gene:ENSORLG00000007597 transcript:ENSORLT00000009524 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 76 GASAC|ENSGACP00000010963 pep:novel group:BROADS1:groupXX:9710597:9711722:1 gene:ENSGACG00000008296 transcript:ENSGACT00000010986 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 122 gi|154183803|gb|ABS70745.1| Hoxa13b [Haplochromis burtoni] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 123 gi|348533874|ref|XP_003454429.1| PREDICTED: homeobox protein Hox-A13b-like isoform 1 [Oreochromis niloticus] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 125 ORENI|ENSONIP00000003711 pep:novel scaffold:Orenil1.0:GL831286.1:1178401:1180455:1 gene:ENSONIG00000002962 transcript:ENSONIT00000003712 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 130 gi|348533876|ref|XP_003454430.1| PREDICTED: homeobox protein Hox-A13b-like isoform 2 [Oreochromis niloticus] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 152 gi|308323811|gb|ADO29041.1| homeobox protein hox-a13b [Ictalurus punctatus] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 153 gi|318066041|ref|NP_001187726.1| homeobox protein hox-a13b [Ictalurus punctatus] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 207 gi|332692475|gb|AEE90156.1| Homeobox A13b [Anguilla anguilla] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 208 gi|385654466|gb|AFI61968.1| Hox-A13b [Anguilla japonica] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 237 GADMO|ENSGMOP00000006061 pep:novel genescaffold:gadMor1:GeneScaffold_1626:110958:112097:1 gene:ENSGMOG00000005714 transcript:ENSGMOT00000006236 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 117 gi|94733686|emb|CAK10846.1| homeo box A13a [Danio rerio] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 118 gi|126631819|gb|AAI33883.1| Hoxa13a protein [Danio rerio] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 119 gi|110282972|sp|Q6W990.2|HXADA_DANRE RecName: Full=Homeobox protein Hox-A13a +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 120 gi|147904274|ref|NP_001078963.1| homeobox protein Hox-A13a [Danio rerio] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 121 DANRE|ENSDARP00000003928 pep:known chromosome:Zv9:19:19195251:19197036:1 gene:ENSDARG00000007609 transcript:ENSDART00000026989 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 134 gi|34484434|gb|AAQ72839.1| HoxA13a [Danio rerio] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 187 gi|60416146|gb|AAH90761.1| Hoxa13b protein [Danio rerio] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 188 gi|197247288|gb|AAI65536.1| Hoxa13b protein [Danio rerio] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 198 gi|110282973|sp|P79724.3|HXADB_DANRE RecName: Full=Homeobox protein Hox-A13b; Short=Hox-A13 +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 200 DANRE|ENSDARP00000052661 pep:known chromosome:Zv9:16:22980334:22982266:1 gene:ENSDARG00000036254 transcript:ENSDART00000052662 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 209 gi|4322053|gb|AAD15936.1| homeobox protein [Danio rerio] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 210 gi|18858821|ref|NP_571269.1| homeobox protein Hox-A13b [Danio rerio] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 169 gi|154183835|gb|ABS70775.1| Hoxa13a [Haplochromis burtoni] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 170 gi|348522813|ref|XP_003448918.1| PREDICTED: homeobox protein Hox-A13a-like [Oreochromis niloticus] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 171 ORENI|ENSONIP00000005793 pep:novel scaffold:Orenil1.0:GL831202.1:602033:606142:-1 gene:ENSONIG00000004601 transcript:ENSONIT00000005797 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 189 gi|94482756|gb|ABF22376.1| homeobox protein HoxA13a [Takifugu rubripes] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 190 gi|119370780|sp|Q1KL22.1|HXADA_TAKRU RecName: Full=Homeobox protein Hox-A13a +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 191 TAKRU|ENSTRUP00000040931 pep:known scaffold:FUGU4:scaffold_12:2381059:2382351:-1 gene:ENSTRUG00000016010 transcript:ENSTRUT00000041073 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 364 TAKRU|ENSTRUP00000046717 pep:novel scaffold:FUGU4:scaffold_346:195264:196175:1 gene:ENSTRUG00000018251 transcript:ENSTRUT00000046875 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 216 gi|47229429|emb|CAF99417.1| unnamed protein product [Tetraodon nigroviridis] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 219 TETNI|ENSTNIP00000012067 pep:known chromosome:TETRAODON8:21:3002908:3004161:1 gene:ENSTNIG00000009207 transcript:ENSTNIT00000012258 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 203 gi|83016924|dbj|BAE53456.1| hoxA13a [Oryzias latipes] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 204 gi|74267519|dbj|BAE44258.1| hoxA13a [Oryzias latipes] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 205 ORYLA|ENSORLP00000006355 pep:known chromosome:MEDAKA1:11:10561890:10563229:-1 gene:ENSORLG00000005043 transcript:ENSORLT00000006356 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 268 GADMO|ENSGMOP00000014823 pep:novel genescaffold:gadMor1:GeneScaffold_1730:103152:104231:-1 gene:ENSGMOG00000013892 transcript:ENSGMOT00000015205 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 181 GASAC|ENSGACP00000009457 pep:known group:BROADS1:groupX:9924555:9926349:-1 gene:ENSGACG00000007134 transcript:ENSGACT00000009477 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 90 gi|400180322|gb|AFP73290.1| Hoxa13alpha [Polyodon spathula] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 340 gi|400180333|gb|AFP73300.1| Hoxa13beta [Polyodon spathula] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 489 gi|145833951|gb|ABP96784.1| transcription factor HOXA13, partial [Polyodon spathula] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 96 gi|20278975|gb|AAM18671.1|AF479755_1 homeobox A13 [Heterodontus francisci] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 104 gi|301128869|emb|CBL59333.1| HoxA13 [Scyliorhinus canicula] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 109 gi|254212171|gb|ACT65746.1| Hoxa13 [Leucoraja erinacea] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 110 gi|255742429|gb|ACU32544.1| homeobox protein HoxA13 [Callorhinchus milii] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 230 ANOCA|ENSACAP00000010093 pep:novel scaffold:AnoCar2.0:GL343275.1:1375087:1379934:1 gene:ENSACAG00000010302 transcript:ENSACAT00000010300 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 418 gi|220898176|gb|ACL81432.1| HoxA13 [Latimeria menadoensis] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 419 LATCH|ENSLACP00000019815 pep:novel scaffold:LatCha1:JH126711.1:2091449:2092713:-1 gene:ENSLACG00000017423 transcript:ENSLACT00000019953 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 982 gi|28629637|gb|AAO43024.1| HoxA13 [Latimeria menadoensis] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 305 gi|15418784|gb|AAK38163.1| homeo box A13 [Gallus gallus] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 306 gi|363730080|ref|XP_003640766.1| PREDICTED: homeobox protein Hox-A13-like [Gallus gallus] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 307 gi|45383838|ref|NP_989470.1| homeobox protein Hox-A13 [Gallus gallus] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 309 gi|20138643|sp|Q90X25.1|HXA13_CHICK RecName: Full=Homeobox protein Hox-A13 +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 321 gi|363730044|ref|XP_003640757.1| PREDICTED: homeobox protein Hox-A13-like [Gallus gallus] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 325 gi|224045310|ref|XP_002195397.1| PREDICTED: homeobox A13 [Taeniopygia guttata] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 387 ORNAN|ENSOANP00000014598 pep:known ultracontig:OANA5:Ultra231:2341837:2395281:-1 gene:ENSOANG00000009173 transcript:ENSOANT00000014601 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 427 gi|327280466|ref|XP_003224973.1| PREDICTED: homeobox protein Hox-A13b-like [Anolis carolinensis] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 518 ORNAN|ENSOANP00000014599 pep:novel ultracontig:OANA5:Ultra231:2341834:2344573:-1 gene:ENSOANG00000009173 transcript:ENSOANT00000014602 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 637 MONDO|ENSMODP00000000533 pep:novel chromosome:BROADO5:8:297309851:297311940:1 gene:ENSMODG00000000449 transcript:ENSMODT00000000547 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 858 SARHA|ENSSHAP00000019523 pep:novel scaffold:DEVIL7.0:GL861706.1:2237477:2240432:1 gene:ENSSHAG00000016581 transcript:ENSSHAT00000019680 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 265 CALJA|ENSCJAP00000015128 pep:novel chromosome:C_jacchus3.2.1:8:28446831:28493607:1 gene:ENSCJAG00000008192 transcript:ENSCJAT00000015966 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 941 EQUCA|ENSECAP00000011829 pep:known chromosome:EquCab2:4:58226715:58229178:-1 gene:ENSECAG00000014192 transcript:ENSECAT00000014781 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 322 PONAB|ENSPPYP00000019837 pep:known chromosome:PPYG2:7:57250549:57252209:1 gene:ENSPPYG00000017697 transcript:ENSPPYT00000020620 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 330 GORGO|ENSGGOP00000023061 pep:novel chromosome:gorGor3.1:7:27448004:27451486:-1 gene:ENSGGOG00000005309 transcript:ENSGGOT00000025719 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 333 MICMU|ENSMICP00000000457 pep:novel genescaffold:micMur1:GeneScaffold_568:806438:808074:-1 gene:ENSMICG00000000502 transcript:ENSMICT00000000502 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 334 PANTR|ENSPTRP00000048099 pep:known chromosome:CHIMP2.1.4:7:25785697:25788919:-1 gene:ENSPTRG00000028643 transcript:ENSPTRT00000055569 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 335 HOMSA|ENSP00000222753 pep:known chromosome:GRCh37:7:27234637:27239725:-1 gene:ENSG00000106031 transcript:ENST00000222753 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 336 HOMSA|gi|24497554|ref|NP_000513.2| homeobox protein Hox-A13 [Homo sapiens] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 357 CAVPO|ENSCPOP00000017024 pep:novel scaffold:cavPor3:scaffold_44:3935601:3980020:-1 gene:ENSCPOG00000024869 transcript:ENSCPOT00000021387 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 402 GORGO|ENSGGOP00000005197 pep:novel chromosome:gorGor3.1:7:27449321:27451201:-1 gene:ENSGGOG00000005309 transcript:ENSGGOT00000005333 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 403 CANFA|ENSCAFP00000004403 pep:novel chromosome:CanFam3.1:14:40371987:40374898:-1 gene:ENSCAFG00000002970 transcript:ENSCAFT00000004756 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 420 MYOLU|ENSMLUP00000007601 pep:putative scaffold:Myoluc2.0:GL429819:3718069:3720392:1 gene:ENSMLUG00000008332 transcript:ENSMLUT00000008328 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 424 OTOGA|ENSOGAP00000015689 pep:known scaffold:OtoGar3:GL873547.1:9335349:9336846:-1 gene:ENSOGAG00000028983 transcript:ENSOGAT00000031806 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 432 DIPOR|ENSDORP00000005921 pep:novel genescaffold:dipOrd1:GeneScaffold_1458:149136:150673:-1 gene:ENSDORG00000006328 transcript:ENSDORT00000006326 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 582 BOSTA|ENSBTAP00000043379 pep:known chromosome:UMD3.1:4:69297275:69298937:1 gene:ENSBTAG00000014735 transcript:ENSBTAT00000046051 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 628 ICTTR|ENSSTOP00000023204 pep:novel scaffold:spetri2:JH393288.1:3825857:3827284:-1 gene:ENSSTOG00000029157 transcript:ENSSTOT00000026959 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 671 SUSSC|ENSSSCP00000026595 pep:known chromosome:Sscrofa10.2:18:50006832:50011480:1 gene:ENSSSCG00000029666 transcript:ENSSSCT00000031604 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 975 MACMU|ENSMMUP00000017696 pep:known chromosome:MMUL_1:3:99025861:99026977:1 gene:ENSMMUG00000013463 transcript:ENSMMUT00000018895 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 408 RATNO|ENSRNOP00000010441 pep:known chromosome:RGSC3.4:4:80558915:80560953:-1 gene:ENSRNOG00000007928 transcript:ENSRNOT00000010441 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 657 MUSMU|ENSMUSP00000125221 pep:known chromosome:GRCm38:6:52257694:52260803:-1 gene:ENSMUSG00000038203 transcript:ENSMUST00000147595 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 409 MUSMU|ENSMUSP00000039170 pep:known chromosome:GRCm38:6:52258853:52260880:-1 gene:ENSMUSG00000038203 transcript:ENSMUST00000047993 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 654 MUSMU|ENSMUSP00000110059 pep:known chromosome:GRCm38:6:52258871:52260802:-1 gene:ENSMUSG00000038203 transcript:ENSMUST00000114416 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 493 OCHPR|ENSOPRP00000009582 pep:novel genescaffold:pika:GeneScaffold_1021:165623:166990:-1 gene:ENSOPRG00000010498 transcript:ENSOPRT00000010486 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 401 LOXAF|ENSLAFP00000000623 pep:novel supercontig:loxAfr3:scaffold_5:31270065:31271497:1 gene:ENSLAFG00000000738 transcript:ENSLAFT00000000738 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 604 ORYCU|ENSOCUP00000019213 pep:novel chromosome:oryCun2:10:11915589:11916957:-1 gene:ENSOCUG00000024694 transcript:ENSOCUT00000021797 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 369 NOMLE|ENSNLEP00000018232 pep:novel supercontig:Nleu1.0:GL397330.1:7065675:7067180:-1 gene:ENSNLEG00000014997 transcript:ENSNLET00000019140 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 808 AILME|ENSAMEP00000006192 pep:novel scaffold:ailMel1:GL192349.1:2340583:2341833:1 gene:ENSAMEG00000005877 transcript:ENSAMET00000006446 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 289 PELSI|ENSPSIP00000002845 pep:novel scaffold:PelSin_1.0:JH224654.1:8748616:8751675:-1 gene:ENSPSIG00000002765 transcript:ENSPSIT00000002856 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 658 ECHTE|ENSETEP00000005515 pep:novel genescaffold:TENREC:GeneScaffold_2951:52438:54477:-1 gene:ENSETEG00000006794 transcript:ENSETET00000006793 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 293 gi|290760363|gb|ADD54543.1| HOXA13 [Pantherophis guttatus] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 328 gi|301607689|ref|XP_002933431.1| PREDICTED: homeobox protein Hox-A13-like [Xenopus (Silurana) tropicalis] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 383 XENTR|ENSXETP00000001626 pep:known scaffold:JGI_4.2:GL172692.1:1384790:1387020:1 gene:ENSXETG00000000734 transcript:ENSXETT00000001626 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 331 gi|125858562|gb|AAI29575.1| Unknown (protein for MGC:160241) [Xenopus laevis] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 384 gi|28268588|emb|CAC44975.2| homeobox protein, Hoxa13 [Xenopus laevis] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 386 gi|147903857|ref|NP_001079321.1| homeobox A13 [Xenopus laevis] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 185 gi|220898189|gb|ACL81444.1| HoxB13 [Latimeria menadoensis] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 186 LATCH|ENSLACP00000017646 pep:novel scaffold:LatCha1:JH126617.1:1286518:1288039:-1 gene:ENSLACG00000015543 transcript:ENSLACT00000017776 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 324 gi|301128881|emb|CBL59344.1| HoxB13 [Scyliorhinus canicula] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 231 gi|158702262|gb|ABW77462.1| homeobox protein HoxB13aa [Salmo salar] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 232 gi|157816081|gb|ABV82059.1| homeobox protein HoxB13aa [Salmo salar] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 235 gi|213511801|ref|NP_001133045.1| homeobox protein HoxB13aa [Salmo salar] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 258 gi|157816099|gb|ABV82068.1| homeobox protein HoxB13ab [Salmo salar] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 259 gi|158702274|gb|ABW77472.1| homeobox protein HoxB13ab [Salmo salar] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 261 gi|213512753|ref|NP_001133050.1| homeobox protein HoxB13ab [Salmo salar] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 270 DANRE|ENSDARP00000110135 pep:known chromosome:Zv9:3:23945568:23948441:1 gene:ENSDARG00000056015 transcript:ENSDART00000129192 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 278 gi|108742095|gb|AAI17626.1| Homeo box B13a [Danio rerio] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 279 gi|113676316|ref|NP_001038377.1| homeobox protein Hox-B13a [Danio rerio] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 280 gi|114149320|sp|Q1ECY2.1|HXBDA_DANRE RecName: Full=Homeobox protein Hox-B13a +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 281 DANRE|ENSDARP00000072890 pep:novel chromosome:Zv9:3:23945474:23947075:1 gene:ENSDARG00000056015 transcript:ENSDART00000078428 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 308 gi|385654474|gb|AFI61975.1| Hox-B13a [Anguilla japonica] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 311 gi|332692483|gb|AEE90163.1| Homeobox B13a [Anguilla anguilla] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 417 gi|255742450|gb|ACU32564.1| homeobox protein HoxB13 [Callorhinchus milii] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 67 GASAC|ENSGACP00000007419 pep:novel group:BROADS1:groupXI:1524174:1526036:1 gene:ENSGACG00000005617 transcript:ENSGACT00000007438 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 69 GASAC|ENSGACP00000004473 pep:novel group:BROADS1:groupXVII:612703:614501:1 gene:ENSGACG00000003421 transcript:ENSGACT00000004487 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 103 gi|47217001|emb|CAG01629.1| unnamed protein product [Tetraodon nigroviridis] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 116 TETNI|ENSTNIP00000000506 pep:known chromosome:TETRAODON8:Un_random:5596687:5598429:-1 gene:ENSTNIG00000000761 transcript:ENSTNIT00000000226 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 248 gi|34484442|gb|AAQ72843.1| HoxB13a [Sphoeroides nephelus] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 135 gi|94482793|gb|ABF22411.1| homeobox protein HoxB13a [Takifugu rubripes] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 136 gi|119370791|sp|Q1KKY3.1|HXBDA_TAKRU RecName: Full=Homeobox protein Hox-B13a +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 138 TAKRU|ENSTRUP00000013975 pep:known scaffold:FUGU4:scaffold_3110:2081:3820:1 gene:ENSTRUG00000005751 transcript:ENSTRUT00000014039 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 139 TAKRU|ENSTRUP00000023652 pep:novel scaffold:FUGU4:scaffold_41:501809:503553:1 gene:ENSTRUG00000009416 transcript:ENSTRUT00000023750 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 145 TAKRU|ENSTRUP00000023653 pep:novel scaffold:FUGU4:scaffold_41:501809:503547:1 gene:ENSTRUG00000009416 transcript:ENSTRUT00000023751 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 150 TAKRU|ENSTRUP00000013976 pep:known scaffold:FUGU4:scaffold_3110:2081:3814:1 gene:ENSTRUG00000005751 transcript:ENSTRUT00000014040 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 180 gi|154183794|gb|ABS70737.1| Hoxb13a [Haplochromis burtoni] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 214 gi|348517905|ref|XP_003446473.1| PREDICTED: homeobox protein Hox-B13a-like [Oreochromis niloticus] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 221 ORENI|ENSONIP00000007784 pep:novel scaffold:Orenil1.0:GL831179.1:56549:59250:1 gene:ENSONIG00000006178 transcript:ENSONIT00000007789 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 255 ORENI|ENSONIP00000007785 pep:novel scaffold:Orenil1.0:GL831179.1:56773:58819:1 gene:ENSONIG00000006178 transcript:ENSONIT00000007790 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 95 GADMO|ENSGMOP00000016357 pep:novel genescaffold:gadMor1:GeneScaffold_1236:14053:15576:-1 gene:ENSGMOG00000015284 transcript:ENSGMOT00000016773 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 199 ORYLA|ENSORLP00000021307 pep:known chromosome:MEDAKA1:8:24280190:24281764:1 gene:ENSORLG00000017031 transcript:ENSORLT00000021308 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 217 gi|83016952|dbj|BAE53479.1| hoxB13a [Oryzias latipes] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 218 gi|74267547|dbj|BAE44272.1| hoxB13a [Oryzias latipes] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 228 gi|385654452|gb|AFI61956.1| Hox-A13a [Anguilla japonica] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 661 gi|332692473|gb|AEE90155.1| Homeobox A13a, partial [Anguilla anguilla] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 107 gi|220898203|gb|ACL81457.1| HoxC13 [Latimeria menadoensis] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 457 gi|28629669|gb|AAO43040.1| HoxC13 [Latimeria menadoensis] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 133 LATCH|ENSLACP00000019072 pep:novel scaffold:LatCha1:JH126829.1:1733877:1737412:-1 gene:ENSLACG00000016784 transcript:ENSLACT00000019205 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 378 gi|290760367|gb|ADD54546.1| HOXC13 [Pantherophis guttatus] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 465 gi|332692506|gb|AEE90183.1| Homeobox C13a [Anguilla anguilla] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 514 gi|385654499|gb|AFI61996.1| Hox-C13a [Anguilla japonica] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 580 gi|385654510|gb|AFI62006.1| Hox-C13b [Anguilla japonica] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 588 gi|332692517|gb|AEE90193.1| Homeobox C13b [Anguilla anguilla] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 711 gi|122891064|emb|CAM14484.1| homeo box C13a [Danio rerio] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 713 DANRE|ENSDARP00000093923 pep:known chromosome:Zv9:23:36104488:36107430:1 gene:ENSDARG00000070353 transcript:ENSDART00000103149 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 730 gi|133778721|gb|AAI34024.1| Hoxc13a protein [Danio rerio] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 724 gi|42491592|gb|AAS16937.1| Hoxc13a [Danio rerio] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 725 gi|50233777|ref|NP_571618.1| homeobox protein Hox-C13a [Danio rerio] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 726 gi|60392440|sp|Q6JIY5.1|HXCDA_DANRE RecName: Full=Homeobox protein Hox-C13a +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 760 gi|83016971|dbj|BAE53494.1| hoxC13a [Oryzias latipes] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 761 gi|74267575|dbj|BAE44286.1| hoxC13a [Oryzias latipes] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 763 ORYLA|ENSORLP00000009904 pep:known chromosome:MEDAKA1:7:12836622:12839267:1 gene:ENSORLG00000007896 transcript:ENSORLT00000009905 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 838 GASAC|ENSGACP00000012375 pep:novel group:BROADS1:groupXII:11575429:11578171:1 gene:ENSGACG00000009389 transcript:ENSGACT00000012399 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 837 gi|154183812|gb|ABS70753.1| Hoxc13a [Haplochromis burtoni] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 842 gi|348521428|ref|XP_003448228.1| PREDICTED: homeobox protein Hox-C13a-like [Oreochromis niloticus] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 843 ORENI|ENSONIP00000015408 pep:novel scaffold:Orenil1.0:GL831196.1:1722395:1726540:1 gene:ENSONIG00000012232 transcript:ENSONIT00000015421 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 539 gi|157815930|gb|ABV81984.1| homeobox protein HoxC13aa [Salmo salar] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 541 gi|213512561|ref|NP_001132996.1| homeobox protein HoxC13aa [Salmo salar] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 540 gi|158702322|gb|ABW77513.1| homeobox protein HoxC13aa [Salmo salar] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 497 gi|158702342|gb|ABW77531.1| homeobox protein HoxC13ba [Salmo salar] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 498 gi|157815968|gb|ABV82003.1| homeobox protein HoxC13ba [Salmo salar] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 499 gi|213510696|ref|NP_001135138.1| homeobox protein HoxC13ba [Salmo salar] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 633 gi|157815986|gb|ABV82012.1| homeobox protein HoxC13bb [Salmo salar] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 634 gi|158702353|gb|ABW77541.1| homeobox protein HoxC13bb [Salmo salar] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 636 gi|213511002|ref|NP_001133015.1| homeobox protein HoxC13bb [Salmo salar] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 303 gi|301614388|ref|XP_002936691.1| PREDICTED: homeobox protein Hox-C13a-like [Xenopus (Silurana) tropicalis] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 304 XENTR|ENSXETP00000053916 pep:known scaffold:JGI_4.2:GL172862.1:280901:284160:1 gene:ENSXETG00000025184 transcript:ENSXETT00000053916 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 144 GALGA|ENSGALP00000017746 pep:novel chromosome:WASHUC2:Un_random:4242272:4246441:1 gene:ENSGALG00000010923 transcript:ENSGALT00000017767 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 616 gi|255742459|gb|ACU32572.1| homeobox protein HoxC13 [Callorhinchus milii] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 299 gi|187936703|dbj|BAG32149.1| Hox13 homolog [Lethenteron camtschaticum] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 213 ORYCU|ENSOCUP00000022744 pep:novel chromosome:oryCun2:19:38666650:38668827:1 gene:ENSOCUG00000012816 transcript:ENSOCUT00000028686 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 453 ORYCU|ENSOCUP00000011026 pep:novel chromosome:oryCun2:19:38666578:38668409:1 gene:ENSOCUG00000012816 transcript:ENSOCUT00000012813 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 543 OCHPR|ENSOPRP00000009236 pep:novel genescaffold:pika:GeneScaffold_3292:31488:33160:-1 gene:ENSOPRG00000010125 transcript:ENSOPRT00000010109 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 469 DIPOR|ENSDORP00000007854 pep:novel genescaffold:dipOrd1:GeneScaffold_4373:8004:9924:-1 gene:ENSDORG00000008369 transcript:ENSDORT00000008369 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 476 ICTTR|ENSSTOP00000013380 pep:novel scaffold:spetri2:JH393300.1:12688606:12690502:1 gene:ENSSTOG00000014942 transcript:ENSSTOT00000014935 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 348 EQUCA|ENSECAP00000011354 pep:known chromosome:EquCab2:11:24741093:24743227:-1 gene:ENSECAG00000013619 transcript:ENSECAT00000014223 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 455 TURTR|ENSTTRP00000006920 pep:novel scaffold:turTru1:scaffold_115054:21574:23381:-1 gene:ENSTTRG00000007314 transcript:ENSTTRT00000007314 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 468 SUSSC|ENSSSCP00000018589 pep:known chromosome:Sscrofa10.2:12:24904057:24905884:-1 gene:ENSSSCG00000017541 transcript:ENSSSCT00000019095 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 515 BOSTA|ENSBTAP00000019523 pep:known chromosome:UMD3.1:19:38428299:38430120:1 gene:ENSBTAG00000014663 transcript:ENSBTAT00000019523 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 460 FELCA|ENSFCAP00000001961 pep:novel scaffold:CAT:scaffold_151827:165591:167442:-1 gene:ENSFCAG00000002120 transcript:ENSFCAT00000002120 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 474 PONAB|ENSPPYP00000009986 pep:known chromosome:PPYG2:17_random:12631826:12633644:-1 gene:ENSPPYG00000008904 transcript:ENSPPYT00000010386 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 475 PANTR|ENSPTRP00000015908 pep:known chromosome:CHIMP2.1.4:17:8867684:8871682:1 gene:ENSPTRG00000009360 transcript:ENSPTRT00000017183 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 477 GORGO|ENSGGOP00000001913 pep:novel chromosome:gorGor3.1:5:35356546:35360559:1 gene:ENSGGOG00000001945 transcript:ENSGGOT00000001955 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 478 HOMSA|ENSP00000290295 pep:known chromosome:GRCh37:17:46802125:46806540:-1 gene:ENSG00000159184 transcript:ENST00000290295 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 479 HOMSA|gi|62865866|ref|NP_006352.2| homeobox protein Hox-B13 [Homo sapiens] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 494 MACMU|ENSMMUP00000027467 pep:known chromosome:MMUL_1:16:32951159:32953504:-1 gene:ENSMMUG00000020872 transcript:ENSMMUT00000029354 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 538 NOMLE|ENSNLEP00000003131 pep:novel supercontig:Nleu1.0:GL397444.1:1201010:1205068:-1 gene:ENSNLEG00000002594 transcript:ENSNLET00000003290 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 491 OTOGA|ENSOGAP00000016185 pep:novel scaffold:OtoGar3:GL873537.1:26901588:26903502:-1 gene:ENSOGAG00000032643 transcript:ENSOGAT00000028098 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 503 MICMU|ENSMICP00000006863 pep:novel genescaffold:micMur1:GeneScaffold_1449:200054:201869:-1 gene:ENSMICG00000007546 transcript:ENSMICT00000007541 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 879 ICTTR|ENSSTOP00000016909 pep:novel scaffold:spetri2:JH393300.1:12688606:12690484:1 gene:ENSSTOG00000014942 transcript:ENSSTOT00000019405 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 264 DASNO|ENSDNOP00000011763 pep:novel genescaffold:dasNov2:GeneScaffold_5676:89866:91274:-1 gene:ENSDNOG00000015177 transcript:ENSDNOT00000015174 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 319 PROCA|ENSPCAP00000011831 pep:novel scaffold:proCap1:scaffold_16404:5466:7223:-1 gene:ENSPCAG00000012722 transcript:ENSPCAT00000012666 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 502 LOXAF|ENSLAFP00000016963 pep:novel supercontig:loxAfr3:scaffold_31:19657029:19658963:1 gene:ENSLAFG00000011262 transcript:ENSLAFT00000011262 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 433 CAVPO|ENSCPOP00000012164 pep:known scaffold:cavPor3:scaffold_53:8561947:8563624:1 gene:ENSCPOG00000013509 transcript:ENSCPOT00000013643 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 525 MUSMU|ENSMUSP00000056315 pep:known chromosome:GRCm38:11:96194316:96197447:1 gene:ENSMUSG00000049604 transcript:ENSMUST00000062709 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 529 RATNO|ENSRNOP00000009934 pep:known chromosome:RGSC3.4:10:84925520:84927793:1 gene:ENSRNOG00000007491 transcript:ENSRNOT00000009934 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 664 PTEVA|ENSPVAP00000014645 pep:novel genescaffold:pteVam1:GeneScaffold_13:439992:441826:-1 gene:ENSPVAG00000015531 transcript:ENSPVAT00000015531 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 629 TUPBE|ENSTBEP00000001928 pep:novel genescaffold:TREESHREW:GeneScaffold_3587:128250:130388:-1 gene:ENSTBEG00000002229 transcript:ENSTBET00000002226 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 581 CANFA|ENSCAFP00000024813 pep:novel chromosome:CanFam3.1:9:24959221:24961243:-1 gene:ENSCAFG00000016870 transcript:ENSCAFT00000026707 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 817 CANFA|ENSCAFP00000032374 pep:novel chromosome:CanFam3.1:9:24958846:24961033:-1 gene:ENSCAFG00000016870 transcript:ENSCAFT00000036939 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 519 AILME|ENSAMEP00000005274 pep:novel scaffold:ailMel1:GL192497.1:1974531:1976336:-1 gene:ENSAMEG00000004997 transcript:ENSAMET00000005493 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 585 ERIEU|ENSEEUP00000003921 pep:novel scaffold:HEDGEHOG:scaffold_340493:60031:61936:1 gene:ENSEEUG00000004337 transcript:ENSEEUT00000004313 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 473 SARHA|ENSSHAP00000015475 pep:novel scaffold:DEVIL7.0:GL856828.1:1183928:1185840:-1 gene:ENSSHAG00000013189 transcript:ENSSHAT00000015602 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 542 MONDO|ENSMODP00000015421 pep:novel chromosome:BROADO5:2:201363754:201365724:-1 gene:ENSMODG00000012310 transcript:ENSMODT00000015707 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 547 MACEU|ENSMEUP00000002138 pep:novel scaffold:Meug_1.0:Scaffold16180:14244:16371:-1 gene:ENSMEUG00000002348 transcript:ENSMEUT00000002347 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 89 gi|255742470|gb|ACU32582.1| homeobox protein HoxD13 [Callorhinchus milii] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 555 gi|42491594|gb|AAS16938.1| Hoxc13b [Danio rerio] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 557 gi|60392439|sp|Q6JIY4.1|HXCDB_DANRE RecName: Full=Homeobox protein Hox-C13b +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 559 DANRE|ENSDARP00000109810 pep:known chromosome:Zv9:11:2108753:2111963:1 gene:ENSDARG00000090023 transcript:ENSDART00000123944 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 598 DANRE|ENSDARP00000104963 pep:known chromosome:Zv9:11:2108784:2111361:1 gene:ENSDARG00000090023 transcript:ENSDART00000123475 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 596 gi|141795820|gb|AAI39598.1| Homeo box C13b [Danio rerio] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 597 gi|145587653|ref|NP_571621.2| homeobox protein Hox-C13b [Danio rerio] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 312 gi|301612439|ref|XP_002935723.1| PREDICTED: homeobox protein Hox-D13-like [Xenopus (Silurana) tropicalis] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 313 XENTR|ENSXETP00000016487 pep:known scaffold:JGI_4.2:GL172799.1:649598:652647:-1 gene:ENSXETG00000007575 transcript:ENSXETT00000016487 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 481 gi|27948458|gb|AAO25535.1| Hoxd13 [Xenopus laevis] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 483 gi|148237723|ref|NP_001083950.1| homeobox D13 [Xenopus laevis] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 556 gi|51513017|gb|AAH80434.1| Hoxd13 protein [Xenopus laevis] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 486 gi|290760380|gb|ADD54556.1| HOXD13 [Trachemys scripta] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 716 gi|86355071|dbj|BAE78770.1| homeobox protein HoxD13 [Pelodiscus sinensis] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 508 PELSI|ENSPSIP00000003274 pep:novel scaffold:PelSin_1.0:JH207676.1:3316053:3320735:-1 gene:ENSPSIG00000003141 transcript:ENSPSIT00000003289 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 745 MONDO|ENSMODP00000011934 pep:novel chromosome:BROADO5:4:187431500:187433177:1 gene:ENSMODG00000009550 transcript:ENSMODT00000012158 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 524 SARHA|ENSSHAP00000018750 pep:novel scaffold:DEVIL7.0:GL849635.1:1958352:1960159:1 gene:ENSSHAG00000015915 transcript:ENSSHAT00000018905 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 903 ORNAN|ENSOANP00000007506 pep:known supercontig:OANA5:Contig13670:2:2722:1 gene:ENSOANG00000004742 transcript:ENSOANT00000007508 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 659 BOSTA|ENSBTAP00000005651 pep:known chromosome:UMD3.1:2:20854099:20856159:-1 gene:ENSBTAG00000004313 transcript:ENSBTAT00000005651 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 698 PANTR|ENSPTRP00000021643 pep:known chromosome:CHIMP2.1.4:2B:180568143:180571274:1 gene:ENSPTRG00000012664 transcript:ENSPTRT00000023465 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 773 CAVPO|ENSCPOP00000006057 pep:novel scaffold:cavPor3:scaffold_3:14216723:14218530:-1 gene:ENSCPOG00000006722 transcript:ENSCPOT00000006791 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 815 SUSSC|ENSSSCP00000016931 pep:known chromosome:Sscrofa10.2:15:91361475:91364735:1 gene:ENSSSCG00000015979 transcript:ENSSSCT00000017400 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 933 VICPA|ENSVPAP00000009487 pep:novel genescaffold:vicPac1:GeneScaffold_1255:7800:9252:1 gene:ENSVPAG00000010195 transcript:ENSVPAT00000010195 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 892 MICMU|ENSMICP00000001984 pep:novel genescaffold:micMur1:GeneScaffold_2366:663890:665481:1 gene:ENSMICG00000002170 transcript:ENSMICT00000002167 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 844 PTEVA|ENSPVAP00000016427 pep:novel genescaffold:pteVam1:GeneScaffold_1976:163050:164759:1 gene:ENSPVAG00000017415 transcript:ENSPVAT00000017413 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 835 RATNO|ENSRNOP00000002155 pep:known chromosome:RGSC3.4:3:57283681:57286998:1 gene:ENSRNOG00000001588 transcript:ENSRNOT00000002155 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 836 MUSMU|ENSMUSP00000001872 pep:known chromosome:GRCm38:2:74668310:74671599:1 gene:ENSMUSG00000001819 transcript:ENSMUST00000001872 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 875 TARSY|ENSTSYP00000003414 pep:novel scaffold:tarSyr1:scaffold_9668:25162:26885:1 gene:ENSTSYG00000003737 transcript:ENSTSYT00000003727 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 940 ICTTR|ENSSTOP00000003689 pep:novel scaffold:spetri2:JH393319.1:5579846:5581651:1 gene:ENSSTOG00000004117 transcript:ENSSTOT00000004112 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 974 MYOLU|ENSMLUP00000006393 pep:putative scaffold:Myoluc2.0:GL429772:7120256:7121776:-1 gene:ENSMLUG00000006997 transcript:ENSMLUT00000006994 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 799 NOMLE|ENSNLEP00000007263 pep:novel supercontig:Nleu1.0:GL397263.1:19974851:19989702:1 gene:ENSNLEG00000006003 transcript:ENSNLET00000007622 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 916 MACMU|ENSMMUP00000030937 pep:known chromosome:MMUL_1:12:39733879:39735565:1 gene:ENSMMUG00000023500 transcript:ENSMMUT00000033061 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 796 PONAB|ENSPPYP00000014468 pep:known chromosome:PPYG2:2b:66248372:66250489:1 gene:ENSPPYG00000012956 transcript:ENSPPYT00000015055 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 811 HOMSA|ENSP00000376322 pep:known chromosome:GRCh37:2:176957619:176960666:1 gene:ENSG00000128714 transcript:ENST00000392539 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 812 HOMSA|gi|116734702|ref|NP_000514.2| homeobox protein Hox-D13 [Homo sapiens] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 946 GORGO|ENSGGOP00000001322 pep:novel chromosome:gorGor3.1:2b:64010266:64013161:1 gene:ENSGGOG00000001339 transcript:ENSGGOT00000001347 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 947 GORGO|ENSGGOP00000019022 pep:novel chromosome:gorGor3.1:2b:64141704:64144599:-1 gene:ENSGGOG00000023186 transcript:ENSGGOT00000028651 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 1000 CALJA|ENSCJAP00000015238 pep:known chromosome:C_jacchus3.2.1:6:42242679:42245820:-1 gene:ENSCJAG00000008250 transcript:ENSCJAT00000016085 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 999 CALJA|ENSCJAP00000015235 pep:novel chromosome:C_jacchus3.2.1:6:42187672:42246677:-1 gene:ENSCJAG00000008250 transcript:ENSCJAT00000016083 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 794 LOXAF|ENSLAFP00000019475 pep:novel supercontig:loxAfr3:scaffold_3:51290483:51292296:-1 gene:ENSLAFG00000027629 transcript:ENSLAFT00000030368 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 813 LOXAF|ENSLAFP00000018398 pep:novel supercontig:loxAfr3:scaffold_3:51290486:51292296:-1 gene:ENSLAFG00000027629 transcript:ENSLAFT00000032596 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 863 OTOGA|ENSOGAP00000021899 pep:novel scaffold:OtoGar3:GL873567.1:10265916:10268215:-1 gene:ENSOGAG00000027055 transcript:ENSOGAT00000031665 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 962 CHOHO|ENSCHOP00000004252 pep:novel scaffold:choHof1:scaffold_113557:5:1489:1 gene:ENSCHOG00000004807 transcript:ENSCHOT00000004819 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 814 TURTR|ENSTTRP00000013062 pep:novel genescaffold:turTru1:GeneScaffold_1722:434301:435597:1 gene:ENSTTRG00000013771 transcript:ENSTTRT00000013770 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 647 gi|289813|gb|AAA48824.1| homeobox protein hoxd13 [Gallus gallus] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 649 gi|45382165|ref|NP_990765.1| homeobox protein Hox-D13 [Gallus gallus] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 650 gi|1170443|sp|P24344.3|HXD13_CHICK RecName: Full=Homeobox protein Hox-D13; AltName: Full=Homeobox protein Hox-4.8; Short=Chox-4.8; AltName: Full=Homeobox protein Hox-4G; Short=Chox-4G +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 746 gi|290760375|gb|ADD54552.1| HOXD13 [Gekko ulikovskii] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 929 gi|290760370|gb|ADD54548.1| HOXD13 [Anguis fragilis] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 996 gi|327283067|ref|XP_003226263.1| PREDICTED: homeobox protein Hox-D13-like, partial [Anolis carolinensis] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 589 gi|224055141|ref|XP_002196614.1| PREDICTED: homeobox D13 [Taeniopygia guttata] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 731 GALGA|ENSGALP00000002343 pep:known chromosome:WASHUC2:27:3518760:3520331:1 gene:ENSGALG00000001543 transcript:ENSGALT00000002345 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 780 gi|118102888|ref|XP_001234927.1| PREDICTED: homeobox protein Hox-B13a [Gallus gallus] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 132 NOMLE|ENSNLEP00000021456 pep:novel supercontig:Nleu1.0:GL397261.1:58496712:58533241:-1 gene:ENSNLEG00000017680 transcript:ENSNLET00000022545 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 599 MYOLU|ENSMLUP00000017526 pep:putative scaffold:Myoluc2.0:GL430021:1062476:1063886:-1 gene:ENSMLUG00000029480 transcript:ENSMLUT00000028295 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 931 gi|397327520|gb|AFO42781.1| HOXD13 [Polyodon spathula] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 762 gi|385654524|gb|AFI62018.1| Hox-D13a [Anguilla japonica] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 867 gi|11037554|gb|AAG27629.1|AF298184_1 homeodomain protein Hoxb13 [Ambystoma mexicanum] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 434 gi|157816005|gb|ABV82021.1| homeobox protein HoxD13aa [Salmo salar] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 435 gi|158702363|gb|ABW77550.1| homeobox protein HoxD13aa [Salmo salar] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 438 gi|213512276|ref|NP_001133022.1| homeobox protein HoxD13aa [Salmo salar] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 595 gi|974817|emb|CAA61031.1| HoxD13 [Danio rerio] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 635 gi|157422860|gb|AAI53653.1| Hoxd13a protein [Danio rerio] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 675 gi|169154439|emb|CAQ15522.1| homeo box D13a [Danio rerio] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 677 gi|61403377|gb|AAH91996.1| Homeo box D13a [Danio rerio] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 678 gi|182889642|gb|AAI65451.1| Hoxd13a protein [Danio rerio] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 679 gi|190337759|gb|AAI63878.1| Homeo box D13a [Danio rerio] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 680 gi|115502403|sp|Q90472.2|HXDDA_DANRE RecName: Full=Homeobox protein Hox-D13a; Short=Hox-D13 +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 681 gi|65301428|ref|NP_571244.2| homeo box D13a [Danio rerio] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 682 DANRE|ENSDARP00000076768 pep:known chromosome:Zv9:9:1977615:1981122:-1 gene:ENSDARG00000059256 transcript:ENSDART00000082332 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 257 gi|313220739|emb|CBY31581.1| unnamed protein product [Oikopleura dioica] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 282 gi|313226651|emb|CBY21796.1| unnamed protein product [Oikopleura dioica] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 283 OIKDI|GSOIDT00011323001 +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 291 gi|172087376|ref|XP_001913230.1| HOX12 [Oikopleura dioica] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 292 gi|42601357|gb|AAS21383.1| HOX12 [Oikopleura dioica] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 963 gi|217035837|gb|ACJ74390.1| Hox13 [Branchiostoma lanceolatum] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 271 gi|70569892|dbj|BAE06497.1| transcription factor protein [Ciona intestinalis] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 272 gi|118343828|ref|NP_001071736.1| transcription factor protein [Ciona intestinalis] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 273 CIOIN|ENSCINP00000014451 pep:known chromosome:KH:7:2706898:2709137:1 gene:ENSCING00000007040 transcript:ENSCINT00000014451 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 462 gi|390357047|ref|XP_001195838.2| PREDICTED: homeobox protein Hox-A9-like [Strongylocentrotus purpuratus] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 463 STRPU|gi|390357047|ref|XP_001195838.2| PREDICTED: homeobox protein Hox-A9-like [Strongylocentrotus purpuratus] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 905 gi|172087438|ref|XP_001913261.1| HOX11 [Oikopleura dioica] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 906 gi|42601388|gb|AAS21413.1| HOX11 [Oikopleura dioica] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 907 gi|313239324|emb|CBY14270.1| unnamed protein product [Oikopleura dioica] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 908 OIKDI|GSOIDT00007256001 +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 995 gi|313245942|emb|CBY34920.1| unnamed protein product [Oikopleura dioica] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 944 gi|313246681|emb|CBY35561.1| unnamed protein product [Oikopleura dioica] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 414 gi|187936705|dbj|BAG32150.1| putative Hox13 homolog [Lethenteron camtschaticum] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 606 PETMA|ENSPMAP00000000838 pep:putative scaffold:Pmarinus_7.0:GL479015:64674:72230:1 gene:ENSPMAG00000000767 transcript:ENSPMAT00000000840 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 367 gi|387598542|gb|AFJ91927.1| homeodomain transcription factor Post2 [Platynereis dumerilii] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 161 gi|13623807|dbj|BAB41078.1| Hox class homeodomain protein DjAbd-Bb [Dugesia japonica] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 400 ORYLA|ENSORLP00000002444 pep:known chromosome:MEDAKA1:10:7284975:7287373:1 gene:ENSORLG00000001963 transcript:ENSORLT00000002445 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 411 ORYLA|ENSORLP00000002442 pep:known chromosome:MEDAKA1:10:7284791:7287414:1 gene:ENSORLG00000001963 transcript:ENSORLT00000002443 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 446 ORYLA|ENSORLP00000002441 pep:known chromosome:MEDAKA1:10:7284766:7287851:1 gene:ENSORLG00000001963 transcript:ENSORLT00000002442 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 413 ORYLA|ENSORLP00000002443 pep:known chromosome:MEDAKA1:10:7284975:7287373:1 gene:ENSORLG00000001963 transcript:ENSORLT00000002444 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 667 gi|348515495|ref|XP_003445275.1| PREDICTED: homeobox protein CDX-4-like [Oreochromis niloticus] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 707 ORENI|ENSONIP00000003532 pep:novel scaffold:Orenil1.0:GL831169.1:4322924:4326145:1 gene:ENSONIG00000002817 transcript:ENSONIT00000003533 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 732 TAKRU|ENSTRUP00000028797 pep:novel scaffold:FUGU4:scaffold_132:640538:643061:1 gene:ENSTRUG00000011401 transcript:ENSTRUT00000028913 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 722 gi|62510|emb|CAA47380.1| Zf-cad1 protein [Danio rerio] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 759 DANRE|ENSDARP00000052708 pep:known chromosome:Zv9:14:33817324:33820231:-1 gene:ENSDARG00000036292 transcript:ENSDART00000052709 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 820 gi|169146089|emb|CAQ13437.1| caudal type homeo box transcription factor 4 [Danio rerio] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 821 gi|158253566|gb|AAI54242.1| Cdx4 protein [Danio rerio] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 822 gi|169642536|gb|AAI60643.1| Cdx4 protein [Danio rerio] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 823 gi|170285089|gb|AAI60957.1| LOC100145392 protein [Xenopus (Silurana) tropicalis] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 824 gi|319918830|ref|NP_571184.2| homeobox protein CDX-4 [Danio rerio] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 825 gi|187607954|ref|NP_001120328.1| uncharacterized protein LOC100145392 [Xenopus (Silurana) tropicalis] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 827 DANRE|ENSDARP00000098008 pep:known chromosome:Zv9:14:33816791:33820242:-1 gene:ENSDARG00000036292 transcript:ENSDART00000114973 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 847 gi|49903787|gb|AAH76488.1| Cdx4 protein [Danio rerio] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 848 gi|197246985|gb|AAI64427.1| Cdx4 protein [Danio rerio] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 645 HELRO|jgi|Helro1|110662 +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 250 RATNO|ENSRNOP00000003973 pep:known chromosome:RGSC3.4:X:91285627:91294213:1 gene:ENSRNOG00000002974 transcript:ENSRNOT00000003973 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 938 MUSMU|ENSMUSP00000033689 pep:known chromosome:GRCm38:X:103321398:103330592:1 gene:ENSMUSG00000031326 transcript:ENSMUST00000033689 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 548 BOSTA|ENSBTAP00000002260 pep:known chromosome:UMD3.1:X:82550390:82559474:-1 gene:ENSBTAG00000001726 transcript:ENSBTAT00000002260 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 959 PONAB|ENSPPYP00000022919 pep:known chromosome:PPYG2:X:70860233:70867569:1 gene:ENSPPYG00000020472 transcript:ENSPPYT00000023882 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 987 HOMSA|ENSP00000362613 pep:known chromosome:GRCh37:X:72667088:72675081:1 gene:ENSG00000131264 transcript:ENST00000373514 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 988 HOMSA|gi|4885127|ref|NP_005184.1| homeobox protein CDX-4 [Homo sapiens] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 960 PANTR|ENSPTRP00000037889 pep:known chromosome:CHIMP2.1.4:X:73178199:73186076:1 gene:ENSPTRG00000022032 transcript:ENSPTRT00000041011 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 998 CALJA|ENSCJAP00000020910 pep:known scaffold:C_jacchus3.2.1:GL286110.1:14959:22457:1 gene:ENSCJAG00000011367 transcript:ENSCJAT00000022105 gene_biotype:protein_coding transcript_biotype:protein_coding +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 9 gi|187936707|dbj|BAG32151.1| Hox14 homolog [Lethenteron camtschaticum] +reg Begin: End: Begin: End: Begin: End: Begin: End: Begin: End: 1000 / 1000 1000 / 1000 1000 / 1000
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Archaeopteryx home: https://sites.google.com/site/cmzmasek/home/software/archaeopteryx
Archaeopteryx references: Zmasek and Eddy (2001) Han and Zmasek (2009)
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